Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03028 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACCCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCTGTAATCGACGGAAGGAGGGCCAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGGAGGAACTTCAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGCGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCACCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTACGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGTCTCTTCAAGCTCCAATTCCTCATCGCTAG 819 0.514 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTMSLQAPIPHR 272
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03028 272 Gene3D - 7 112 IPR012677 -
Viun11g03028 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Viun11g03028 272 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Viun11g03028 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Viun11g03028 272 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Viun11g03028 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Viun11g03028 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Viun11g03028 272 PANTHER BOULE-RELATED 6 248 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun11g03028 Viun-Chr11 41438334 41443515 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03028 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.99e-14 69.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03028 - - aip:107629746 442.58
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g03028 11 41438334 41443515 Viun11g03028 11 41438334 41443515 ECH