Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03027 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACCCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCTGTAATCGACGGAAGGAGGGCCAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGGAGGAACTTCAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGCGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCACCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTACGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTCGCTGTGCCGCAGGCGTGA 804 0.5174 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSVCFAVPQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03027 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Viun11g03027 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Viun11g03027 267 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Viun11g03027 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Viun11g03027 267 Gene3D - 7 112 IPR012677 -
Viun11g03027 267 PANTHER BOULE-RELATED 6 239 - -
Viun11g03027 267 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Viun11g03027 267 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03027 Viun-Chr11 41438334 41443515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03027 12 195 C2H2 Transcription Factor Family AT2G19380 31.068 4.53e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03027 - - gmx:100779046 445.662