Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03022 ATGAGCATAACCGAAGAAGAAGAAGGGAAAGGAGGTTCCAGGAAGCGCCGGCGTGAGGCGGAAACTGCATTCCGGGGAGTGAGGAAGCGGAGCTGGGGACGTTACGTATCGGAGATAAGGCTGCCGGGTCAGAAAACCCGGATATGGCTCGGGTCCTTCGCGTCGCCTGAGATGGCGGCCAGGGCTTATGACTCCGCCGCTTTCTTCTTGAAAGGAACATCTGCCATCCTTAATTTCCCCGACCTCGTCCACTCCCTTCCTCGCCCTCTCTCCTCCTCCCGGAGAGACATACAATCCGCCGCCGCAACAGCCGCTCTCCACCCTCCTTCTCTCGCTACCAACAGCAGCGGCACCTGGTGGGACAACTTGGGAGACGAATCCAGGATTTCGACGACGTCGTTTGAGGATGTGAAAGAGGCGCCTCTGATGAGCCCCCTAAGGGTGGACTTCACTTTCGGAGATTTCTCCTGGAACAACCTCTTCCATTTCAACTATGATGACATTCTTATGTCGTGA 516 0.562 MSITEEEEGKGGSRKRRREAETAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSAILNFPDLVHSLPRPLSSSRRDIQSAAATAALHPPSLATNSSGTWWDNLGDESRISTTSFEDVKEAPLMSPLRVDFTFGDFSWNNLFHFNYDDILMS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03022 171 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Viun11g03022 171 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Viun11g03022 171 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g03022 171 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Viun11g03022 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 117 - -
Viun11g03022 171 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03022 Viun-Chr11 41416206 41416721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03022 6 109 AP2-EREBP Transcription Factor Family AT5G11590 56.731 5.51e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g03022 AP2 2.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03022 K09286 - gmx:100783790 213.386