Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03020 ATGGCTTCCTCTAATGGTGGAGTGCCGCCGGGGTTTAGGTTTCATCCAACGGACGAGGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCGTTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGAAAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATCGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTCTGGAAAGCAACAGGGAGAGACAAGTGCATCAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACCGATTGGATCATGCATGAGTACCGTCTAGAAGAAGCCAATGACCCTCAAGGAAGCGCCAATGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAATGAAGGTGGGTCTACACATAACCCAGATCAACAAATGAACAATTCCTCAAGCAGTAACGGACGCTCCTTCATACATAGAGAAAACCATTACTTGCTACACCAAAATCATAGGAACTCACCTGGGCTTGAGCTTGATAAGCCCGAGCTCGCTCTCCATTACCCACACTTGCAAAATCCCCAGTACTCATCACTGTTCCAATCCCAAACCCTTCTTCAAACCCAGAAACCTATGGTTTTTGACTACTCCTATGCATCATCTCTACCTTCAGAAACCCCTGTAATGGCAAAGCAACTGATGGGAAACCCTAGGGAGTGTGAGAGTGGCAGCGAGGGCCTGAGATATCAAGTTTCGGAGTCTGGAATTGAGGTTGGATCGTGTGAGCCAAACCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATAAACGAATGGGGCGTTCTTGATAGGCTTGTTACCTCTCATCTTGGGAATGAAGAATCAAACAAAGGACTGAGATTTGAGGAGCCAAATCCTCAGTCTGTGCATCAGATCAACCAGCTTTCGTTGCGGGGAGAAATGGATTTCTGGGCCTATGGAGGAAAACAATGA 1086 0.4549 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEEANDPQGSANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSSNGRSFIHRENHYLLHQNHRNSPGLELDKPELALHYPHLQNPQYSSLFQSQTLLQTQKPMVFDYSYASSLPSETPVMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNQEMGGGRGEGINEWGVLDRLVTSHLGNEESNKGLRFEEPNPQSVHQINQLSLRGEMDFWAYGGKQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03020 361 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Viun11g03020 361 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Viun11g03020 361 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Viun11g03020 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 224 - -
Viun11g03020 361 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Viun11g03020 361 MobiDBLite consensus disorder prediction 167 188 - -
Viun11g03020 361 FunFam NAC domain-containing protein 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03020 Viun-Chr11 41407882 41409507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03020 1 354 NAC Transcription Factor Family AT1G33280 55.432 6.79e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun11g03020 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03020 - - gmx:100804181 664.07