Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03019 ATGGTGGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTATGATTTCCTCACTTTTCCGGCCACCACCGACGCCTCTTCCGGCCAACCCTTCCGGACCAGTGTCCAACGCTTTCTCTCAGACCATGCGCGCATCACTTTCCCTCCCTCCTTATTTCCGTCCCTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCGTTGACGGACCCGATCTCTCACCCGCGGTCGTCACTCTTGACATTGTTGAGGAGGATGTTACTCGTTCTCGCTCTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCCGTTTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCGAGTAATGCAGTCGAACCATATCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGGTGTAAATCATGTAACTTTGCCATCACCGTGGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAATACCCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCATCTGCTTACTCTCAGTGGAAGAGAAGGTGGCTCTAAGCTTCTATCTGGATCTGATATTATGGATTTCTGGGACAGACTGTGTACTTCAATTTCTGTGAGGAAGGTTAGTGTGATGGACTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCAAAGGACATTCCTGGTATGGTAATTGGGCTTATGAATTTGGAACAGGCAGCTATGCTCTCACCCAAGATGCCTACAAAAACGCGGTGAATACCCTGTCAAGCATGCCCTTGTCATCGTTTTCATTTCATGGACGGGGACCACGAAGTCGCCTGGAGTGTATCATTTCTCTCTACCAGTCCTTGGCAGAAACAGAACTTCTAAACATTCAAGATCTCTTCTCCTTTTTGTTGATGTTGATTCGTGAATGTCGTAAGCCAATATCCATGAGAAGTTTTAAGCAGACCAGTAATTTGTTGTGTACATGGACGGGAAAAGATGTTGAAGAGGTGCAACAAGCCCTTGTCAAGGTATTGATTGCATCAGGTGCGTGTACCGAGGCCAAATGGGTTACAAGGCGTGCTCTCAAGGGTGCTGTATGCAGGGGTGTGTCATCTCCAGAGCTTCTTGACTACTGTCTTAAGTACTTGCCTGGGAAATTAGCAGCCAATGGGATGGTAGTTTGTTCACGATGTAATCCTGTTTCCTGTGCAATCGAGTTCAGGTTGGGACCTATGAGTAATGCACTAAGTATACATTCAAGCTACCCTACAGAAGGGCAATTGATCTCTGACTTGACATTTTTATTCGACTCAATAATACATCCTGACAAAATGATGTCCTACAGACCTAGAATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGATTGTAAACAATTTATGAAAGATTACAAACCATATGAAATGGCCATTGAACCGCCTTCTGTTATTAGGCTGTGGTGTCATGTCGAGCTTTCTGATCAGCCTAAGGACGATCCATCCCCACCCCCAGAGCTAATTGTGTTGCCTTTGAATGCTACCGTTGCTGAGCTCAAGAGCGAAGCCACTAATGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTAGGATATGGGTCAATCAGTGACTCCCTGACAGTAAAGTTCTTGCTTGGAACAAGTGGATCAGTCCGCATTCAAGGTAAATGCCCAGCCAAACACGGGCTAAGCAGATTCCGGATGGAACGAGGAACTGAGGTGTGGAAGGTTGATTGCACTTGTGGGGCTAAGGATGATGACGGAGAGAAAATGCTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTCATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACTTGTACCGTGAGGAGAAAAAGAGATCACCAGCATCTGCTGAGGAAACTAATGGGACCTGTATATTCAACTCATCCTGCAGAGATGAGGCAGCAGCAAGGGACTGTCCCACGGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2124 0.4605 MVVNERPSKRMKRRVTADLYDFLTFPATTDASSGQPFRTSVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEPYQRPCSRCGNLLQLSETRCKSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECIISLYQSLAETELLNIQDLFSFLLMLIRECRKPISMRSFKQTSNLLCTWTGKDVEEVQQALVKVLIASGACTEAKWVTRRALKGAVCRGVSSPELLDYCLKYLPGKLAANGMVVCSRCNPVSCAIEFRLGPMSNALSIHSSYPTEGQLISDLTFLFDSIIHPDKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIEPPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVAELKSEATNAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSVRIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIHNSDGMPSKFVCMRCVNLYREEKKRSPASAEETNGTCIFNSSCRDEAAARDCPTVSCNITVNFGVR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03019 707 SMART PHD_3 611 657 IPR001965 -
Viun11g03019 707 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Viun11g03019 707 Pfam PHD-finger 612 658 IPR019787 -
Viun11g03019 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 666 - -
Viun11g03019 707 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Viun11g03019 707 CDD PHD_MMD1_like 611 656 - -
Viun11g03019 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03019 Viun-Chr11 41397493 41400667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03019 24 656 PHD Transcription Factor Family AT5G22260 27.695 5.45e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun11g03019 PHD 3.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03019 K26271 - gmx:100780558 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g03019 11 41397493 41400667 Viun11g03019 11 41397493 41400667 ECH