Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03011 ATGTCGTCCAACCCTCCCCCGCCGCCGCACTCTTCGCACAAACCCGGTCAAGACCATCCTGCGCCTGGGAAACCGTCATCGCCCGCCGGAAGAGCTAAGCTCCTGAAGATCCCGCCCATTCCTATTCGACGGAGTAATTTAGGCAATGAAGAGGAGGAAGAAGAGGAAGATGAATGCTCTGAATCTTCTTCCATCTTGCTCGCGTCCTCTTTAGGGCTGAATAATATTCGAACGCGTTCTTCCGCTTCGCCTCTTCGCTATTCCTCCTCCGTTGGCGCTCCTTCCTTCCTCACACAGAATGCTGCTGTCACTATCAATGACGCCAGATTTAGATCCAAATTTAATTCCCATCCGAAAAGAGACCTAGGGGAAAAAGCTCATTTGAATCAAACCAAATCGCTCAGAGCTCATTCGCAACTCATTCCTGTGCTAGAGGGTCATCATGGAGCTTTCGCCAAAGAAATGCAATCCCCACGTTTTCAGGAAATCCTGCGACTTACTAGTGGACGCAAAAAGAGAAATCCTGATATCAAAAGCTTTTCCCATGAACTCAACTCCAAGGGAGTCAGACCATTTCCAATCTGGAAACATCGTGCCTTTGGCCACATGGAGGAAGTCATGGGGGCGATTAGAGCTAAGTTTGAGAAATTAAAGGAAGAGGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGCATTCTTGAAAAAAACTTAGTGTGTGATCGTGAATGGAGAGAGAGGCTGGAGGATCTGTTGATTGTTGCTCAACAATGTGCAAAGATGTCTGCTACCCAGTTTTGGATCAAATGCGAATCTATAGTTCAAAATCTAGATGACAAACGTCAAGAATTGCCAGTGGGGATACTCAAGCAAGCTCATACACGCCTACTGTTTATTCTCACTCGTTGCACTCGATTAGTGCAATTTCAGAAGGAAAGCGGATTTGAACAAGACCACATTCTGGGTCTTCACCAACTCAGCGACCTTGGGGTCTATTCTGAGCAAATTTTGAAGGCTGCACAGCAGAATTCTAGTATTCCACCTGCTGGACACGAGACCGCTGACAAACAGTTAAAAATGTCACGTAGTAAAGAGAAAGACAAACCGATGACAACACAGGGTAAAGCTGACCAACAAGTAAGTGTTGCGGTTGGCAACCCGGAGGTTAGTACAGCCAAGAGTGTTGAATCAACTTCTGGCAGCTATAGGATGTCTTCTTGGAGAAAGTTTCCAACTGCTGAGAAAAAGCGAAAAGATCAAGATGCTGCAGATACCCCCCCATCCAAAGGTGAAATGGACAACTTGCAAGTCAATGCTGAAAATTTGGATACTTCCTCTTGTCATCCTGACAATTCACAATCATCATCAAGAACGCGAAAGATTTCTTGGGGATTCTGGGGAGACCACCATACTCTTGCATACGGGGATTCAATGATATGCAGGATTTGTGAGGTTGAAATACCGATTGTACATGTGGAGGAGCATTCAAGAATATGCACAATTGCGGATAGATGTGATTTGAAAGGTTTAACTGTAAACGAGCGTCTTGAAAGAGTTTGTGAAACCATTGAAAGGATAATGGAATCCTGGACACCAAAAAGCACACCCAAAAGCACTGATACTCCTGGAGAAAGCTTTGACCTTGCCTCTTCAAATGTGCTTGAAGAGTTCAATGATTTATCTCTAGAGAAAAATAACCTGACACTTAGATGCTCTGAAGACATTCTCGACTCTACTACAGATCCTGACAATACTTTTCTCATGGACGATCTGAACCTTTCACCCAGAACATCATGCGAGGCTCGCATCTGCGTAAAACCTGATCATGGAACAAAGGTATCTTCAGCTGGGAGCTTGACACCGAGATCACCATTGGTAACACCACGAACCACTCAGGTGGAAATGTTACTAAGTGGACGGAGAACATTGTCTGAACTTGAAAGTTGTGAACAGATAAGCAAGCTAGTTGAAATAGCCCGTGCTGTCGCAAATGTGAACAACTGTGACTATAGTGCTCTGGAGTATATGCTTGATCGCTTAGAAGACCTGAAATATGCCATTCAAGACAGAAAAGTGGATGCCCTTATTGTGGAGACTTTTGGACGACGAATAGAGAAACTTTTGCAGGAGAAATATATATCCCTTTGTGGGCAGATAGAAGATGAAAAGGTGGACTCATCAACTAGCGTAGCTGATGAAGAGAGTTCAGTGGAAGATGATGCAGTTCGTAGCCTACGTGCTAGCCCTATTAATACTTGTTCCAAGGACCGAACCTCTATTGAAGACTTTGAAATAATAAAACCCATAAGTAGGGGTGCATTTGGACGAGTTTTTCTTACCCGAAAAAGAGCAACCGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGGCAGATATGATCCGCAAAAATGCAGTTCAAAGTATTTTGGCAGAGAGAGACATACTTATATCAGTTCGAAATCCTTTTGTGGTTCGGTTTTTCTACTCCTTCACATGTCGGGAAAATCTTTATCTAGTTATGGAATATTTGAATGGTGGAGATCTTTATTCGATGTTGAGAAATCTAGGCTGCTTAGATGAAAACATGACTCGAGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAACGTGATTCACAGAGACCTGAAGCCAGATAACTTACTGATTGGTCAAGATGGCCATATTAAGTTGACAGATTTCGGGCTCTCAAAGGTTGGTCTTATCAACAGCACAGATGATTTATCAGCGCCATCATTTTCGGCCATCCTAGAAGACAACGATAAACCAAAACCTAGACATTCTTCAAAACGGGAAGATCGTCAAAGACAATCAGTGGTTGGCACTCCGGATTACCTGGCACCTGAAATACTACTTGGCATGGGACATGGTGCAACTGCTGATTGGTGGTCTGTGGGTGTCATAATGTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCTGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAAGATTCCTGATGAGATGAGCTTTGAAGCATATGATTTGATAAATAAATTATTGAACGAAAACCCAGTCCAAAGATTAGGCGCGACAGGGGCTACGGAAGTTAAACGCCACGCCTTCTTCAAAGATACTAATTGGGATACACTAGCAAGGCAGAAGGCTATGTTTATTCCATCGGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCCGAGGACGAACACTGTCTCGGAGGTAGTGATTTTGATGAGATTAGTGGTTCCGGCAGCAGTGGTTCCGGCAGCGCTGTGTTAGATGAAGATGGTGATGAGTGTGGTAGTTTAGCAGAGTTCGGTGCTCCACCTCTTGAAGTGCAGTTCTCGTTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTGGCTTCTATCAATTACGATTTGGTGATTAAGAACTCCACCAGGGAATCAACTCAATGA 3504 0.4344 MSSNPPPPPHSSHKPGQDHPAPGKPSSPAGRAKLLKIPPIPIRRSNLGNEEEEEEEDECSESSSILLASSLGLNNIRTRSSASPLRYSSSVGAPSFLTQNAAVTINDARFRSKFNSHPKRDLGEKAHLNQTKSLRAHSQLIPVLEGHHGAFAKEMQSPRFQEILRLTSGRKKRNPDIKSFSHELNSKGVRPFPIWKHRAFGHMEEVMGAIRAKFEKLKEEVDSDLGGFAGDLVGILEKNLVCDREWRERLEDLLIVAQQCAKMSATQFWIKCESIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGFEQDHILGLHQLSDLGVYSEQILKAAQQNSSIPPAGHETADKQLKMSRSKEKDKPMTTQGKADQQVSVAVGNPEVSTAKSVESTSGSYRMSSWRKFPTAEKKRKDQDAADTPPSKGEMDNLQVNAENLDTSSCHPDNSQSSSRTRKISWGFWGDHHTLAYGDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVCETIERIMESWTPKSTPKSTDTPGESFDLASSNVLEEFNDLSLEKNNLTLRCSEDILDSTTDPDNTFLMDDLNLSPRTSCEARICVKPDHGTKVSSAGSLTPRSPLVTPRTTQVEMLLSGRRTLSELESCEQISKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIEKLLQEKYISLCGQIEDEKVDSSTSVADEESSVEDDAVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLTRKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDENMTRVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSAILEDNDKPKPRHSSKREDRQRQSVVGTPDYLAPEILLGMGHGATADWWSVGVIMYELLVGIPPFNAEHPQQIFDNIINRDIQWPKIPDEMSFEAYDLINKLLNENPVQRLGATGATEVKRHAFFKDTNWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCLGGSDFDEISGSGSSGSGSAVLDEDGDECGSLAEFGAPPLEVQFSFSNFSFKNLSQLASINYDLVIKNSTRESTQ 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03011 1167 MobiDBLite consensus disorder prediction 1 15 - -
Viun11g03011 1167 MobiDBLite consensus disorder prediction 1 63 - -
Viun11g03011 1167 FunFam probable serine/threonine protein kinase IREH1 763 853 - -
Viun11g03011 1167 ProSiteProfiles Protein kinase domain profile. 765 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g03011 1167 MobiDBLite consensus disorder prediction 357 374 - -
Viun11g03011 1167 MobiDBLite consensus disorder prediction 375 408 - -
Viun11g03011 1167 SUPERFAMILY Protein kinase-like (PK-like) 749 1073 IPR011009 -
Viun11g03011 1167 Gene3D Transferase(Phosphotransferase) domain 1 849 1070 - -
Viun11g03011 1167 PANTHER SERINE/THREONINE-PROTEIN KINASE 446 1106 - -
Viun11g03011 1167 MobiDBLite consensus disorder prediction 411 428 - -
Viun11g03011 1167 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Viun11g03011 1167 MobiDBLite consensus disorder prediction 1096 1117 - -
Viun11g03011 1167 MobiDBLite consensus disorder prediction 932 951 - -
Viun11g03011 1167 Pfam Protein kinase domain 765 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g03011 1167 CDD STKc_MAST_like 771 1057 - -
Viun11g03011 1167 SMART serkin_6 765 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g03011 1167 MobiDBLite consensus disorder prediction 929 952 - -
Viun11g03011 1167 MobiDBLite consensus disorder prediction 343 435 - -
Viun11g03011 1167 Gene3D Phosphorylase Kinase; domain 1 763 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03011 Viun-Chr11 41351744 41360652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03011 32 1161 AGC Kinase Gene Family AT5G62310 62.403 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Viun11g03011 Pkinase 4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03011 - - gmx:100817975 1895.55