Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03008 ATGACAATGATGCGAAAGACATTGTTGATGACACTGTTATTAGTTTCCTCAGCTTTCTCAACAGCCACATCAACGAGGAGACATTCCAACAGCAACATAGATTGGTGGTGCAGCCAAACCCCGTACCCAGAGCCATGCAAATACTACATGCAACAGAGCCATTACCATCACAGACTCAAACTCAAACACAAATCCGAATTCCGTGAAATTCTCATTCACTTGGCGCTGGAGAGAGCAGTGATCATGAGAAAGAAAGCACGTGACTTGGGGCACAACGGGATCACCAGGAAGGAAAAATCAGTGTTCCGTGATTGTCTGAAGCTCTACGATAACACCGTGTTCCATCTCAACCGTACCCTCCAAGGCCTTCACGAGAAGAGAAGCTGTTCACCGTTTGATGCGCAAACGTGGCTCAGCACAGCTCGCACAAACATCGAAACGTGTCAGCACGGGGCACTGGAACTTGGGGTTCAAGATTTCGTGGCTCCCACCGAGAGATGCAATGTAACCGAGATTATAAGCAATGGGTTGTTCGTGAACTGGGCTTTCCTGAAGTACGAAGCGGTTCATTATACGGAAGATGCAGAGGCTGAATTTCCAAGCTGGTTTTCCGTGCACGAGAGGAAGCTGTTGCAGTCTTCTTCCATAAGGGCTCATCTGGTGGTGGCCAAAGATGGTTCGGGGCATTTCAAGAGTGTGCAAGCTGCTATCAATGCCGCTGCAAGGAGAAGGACAAAGAGCAGATTCATTATTCACGTCAAGAGAGGGGTTTACAGAGAGAATATTGAGATTGACAAGACCAATGACAACATTATGCTGTTCGGTGATGGCATGAGAAACACCATTATTACAAGTGGAAGAAGCGTTAATGCCGGCTACACCACCTATAGCTCCGCAACAGCAGGAGTTGATGGTCTTCACTTCATTGCAAGAGACATTACCTTCAGAAACACGGCGGGTCCGCTGAAGGGTCAAGCGGTGGCGCTCCGATCAGCCTCTGATCTGTCTGTGTTCTATCGGTGTTCCATAGAAGGGTATCAAGACACGCTCATGGTCCACGCCCAGCGACAATTCTACAGAGGATGTTACATCTACGGCACAGTTGACTTCATATTCGGAAATGCCGCTGTTGTTTTTCAGAACTGTGTCATTCTTGTAAGAAGGCCCTTAAATGGACAGGCAAACATGATCACAGCCCAAGGCCGAGACGACCCGTTTCAGAACACTGGGTTTTCGATCCATAACTCTCAGATCAGGGCTGCCCCAGATCTCAGGCCCGTTATTGGCAGGTTCAACACCTTCTTGGGCCGCCCATGGCAACGTTACTCCAGAGTTGTGGTGATGAAATCATTCTTGGACAGCATGGTGAACCCAATGGGCTGGTCTCCATGGGATGATTCTAATTTCGCTTTGAATACTCTGTATTATGGAGAGTACATGAACTTTGGGCCCGGTTCATCCACCAGAAACAGGGTACGATGGCCCGGTTTTCACAGCATAACTAGCCCAACTGAGGCATCGCGGTTCACAGTTGCTAACCTTCTCGCTGGGCGCACATGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1599 0.4897 MTMMRKTLLMTLLLVSSAFSTATSTRRHSNSNIDWWCSQTPYPEPCKYYMQQSHYHHRLKLKHKSEFREILIHLALERAVIMRKKARDLGHNGITRKEKSVFRDCLKLYDNTVFHLNRTLQGLHEKRSCSPFDAQTWLSTARTNIETCQHGALELGVQDFVAPTERCNVTEIISNGLFVNWAFLKYEAVHYTEDAEAEFPSWFSVHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAAARRRTKSRFIIHVKRGVYRENIEIDKTNDNIMLFGDGMRNTIITSGRSVNAGYTTYSSATAGVDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPVIGRFNTFLGRPWQRYSRVVVMKSFLDSMVNPMGWSPWDDSNFALNTLYYGEYMNFGPGSSTRNRVRWPGFHSITSPTEASRFTVANLLAGRTWLPATGVPFTSGL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03008 532 Gene3D - 213 532 IPR012334 -
Viun11g03008 532 CDD PMEI-like_3 35 180 - -
Viun11g03008 532 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Viun11g03008 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 181 IPR035513 -
Viun11g03008 532 PANTHER PECTINESTERASE 15 522 - -
Viun11g03008 532 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Viun11g03008 532 SUPERFAMILY Pectin lyase-like 216 531 IPR011050 -
Viun11g03008 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 180 IPR035513 -
Viun11g03008 532 Pfam Pectinesterase 220 517 IPR000070 GO:0030599|GO:0042545
Viun11g03008 532 FunFam Pectinesterase 213 532 - -
Viun11g03008 532 NCBIfam pectinesterase inhibitor domain 6 178 IPR006501 GO:0004857
Viun11g03008 532 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Viun11g03008 532 SMART PMEI_2 28 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03008 Viun-Chr11 41339589 41341888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03008 23 532 Carbohydrate Esterase AT5G51500 59.612 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03008 K01051 - gmx:100807908 956.051