Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03001 ATGGACAGTTTCACTCATGTTCCCCCCGGTTTTAGGTTCCATCCAACGGATGAAGAACTCGTTGATTACTACCTTAGGAAGAAAGTGGCTTCAAGGAGGATTGACCTGGATGTGATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAACATGAACTCATAGGCATGAGGAAAACCTTAGTCTTTTACAAAGGTCGAGCACCAAATGGACAAAAGTCAGATTGGATAATGCATGAATATCGCCTTGAAACAGATGAAAATGGCACTCCACAGGAAGATGGTTGGGTTGTGTGCAGAGTATTCAAGAAGAGAGTAACAACGATGCGGAAAGTGAACGAGCACGACTCTCCCAATTGGTACGATGAGCAAGTATCTTTCATTCAAGACATGGACTCACCGAAGCAGAATTCTCAACCTAATTTGGTCTACCAGCTTCCTTATCCTTGCAAGAAAGAGCTAGATGTGCCCTACCAGGTGCCTCGTGACCACTTCCTTCCACTTCTGGAGAGCCCAAAACTGCTTCAATCTGCTTCAGCCATGACCCCAAATCCCATGGCACCATATCTTCTAGATCATGCGAACCACTCCACCACTCTGCTTCCCTCGTTACTCATACAAGAAGAACATGTTATTGGTCAGCAGATGAACTTTCAGACAACCTACGGCAACTGCAATGAACAAGCAATGGATCAAGTAACCGATTGGAGAGTGCTTGACAAGTTCGTTGCTTCACAACTCAGTCAAGATGGATCCAAAGACAATATCTTTCACGGCACGGACAACGGCAATTGCAATGTACAGTTCAGACATTTCGACAAACATGAGGTGGTGGTGCCTCAGGAAAATGCTTCAACATCAAACTCTAGCTACCCAATTGCATTGTGGAAATAG 1050 0.441 MDSFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEDGWVVCRVFKKRVTTMRKVNEHDSPNWYDEQVSFIQDMDSPKQNSQPNLVYQLPYPCKKELDVPYQVPRDHFLPLLESPKLLQSASAMTPNPMAPYLLDHANHSTTLLPSLLIQEEHVIGQQMNFQTTYGNCNEQAMDQVTDWRVLDKFVASQLSQDGSKDNIFHGTDNGNCNVQFRHFDKHEVVVPQENASTSNSSYPIALWK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03001 349 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Viun11g03001 349 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Viun11g03001 349 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Viun11g03001 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 249 - -
Viun11g03001 349 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Viun11g03001 349 FunFam NAC domain-containing protein 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03001 Viun-Chr11 41298448 41302298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03001 1 349 NAC Transcription Factor Family AT1G12260 56.906 5.21e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun11g03001 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03001 - - gmx:100809525 607.06