Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03000 ATGGCTCGTGGAAAGGTTCAGCTTAAGAGAATTGAGAACCCGGTGCACAGACAAGTCACCTTCTGCAAACGCCGAGCGGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGCATGATTGAGAGGTACATGAAGTTCACGAGAGGGGCTCAACCTGAAGCAGCACCCGAACCACTTCCTCTGGATGCAAAGGAGGAATCTAACTTGCTAAAACAAGAAATCCAAACACTGCAAAAGAGTATCAGGTATTTGTTTGGAGGTGGAAACAAGACCTCGACAATCGATGAACTACAAGTGTTGGAGAAGAATCTGGAAACTTGGATATATCATATTCGCTCAATGAAGACCAACATCATGTTACAAGAAATTGAAGCATTGAAAGATAAGGAGGGAACACTTAAAGCGGCAAATAAATATCTCCATGATAAGATTGTGGAGAATACTGCAGTTCATAACTTTGCTCAATTTGCCACTGATGTTCCGTACCCACTAATTATACAAGATGGGAGTTTTCAACTCTATTAA 606 0.429 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGMIERYMKFTRGAQPEAAPEPLPLDAKEESNLLKQEIQTLQKSIRYLFGGGNKTSTIDELQVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGTLKAANKYLHDKIVENTAVHNFAQFATDVPYPLIIQDGSFQLY 201
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03000 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun11g03000 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun11g03000 201 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Viun11g03000 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Viun11g03000 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun11g03000 201 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun11g03000 201 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun11g03000 Viun-Chr11 41288322 41292717 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03000 1 200 MADS-box Gene Family AT1G71692 59.242 1.03e-76 227
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun11g03000 K-box 2.4e-20 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03000 - - gmx:100783345 345.51