Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02981 ATGAAACGAGGAAGAGGAGAGAGCATGGGAGAATCCAGTTCTAGGGTTTCTCCAACTCTACAGCACCCCACAGCAGGCATCATCAAGCGGCTTCGTCTCGAGAACTTCATGTGCCACACCAAACACGAGACTGAGTTCGGAAGCCATGTCAATTTCATCACGGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGGGCAACCACTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCATGTTATCAATGTTGAACGCCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCAAGGAAGGAAAGTTGTTAGTCGAAAGGCAGAGCTTCAAGAGATCGTTGAACATTTTAATATTGATGTGGAGAATCCGTGTGTAATTATGACTCAAGACAAAAGCAGGGAGTTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAGAGCATTTTCAAGGAAATTACTGTCGCATATGAAGTAATTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAACCGGATACCTACCTGCCAAGCTAAGATTGATCAACAACTGCATTTGGTTGATAAGTTGAAGGAAAGATGCTCTGAGAAGAGAGATGAGATTGCAAGAATGTTGGAGAAGACATCACAAGTTAAGCAAATGAAGGAAAACTTAAACCAATCTGTGTCCATGGCAAAAAAAGAGGCATTTCAACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTCAAACAACAAGTACAGGATATTCACGAGCAGCATGTAAAAAATACTCAGGCTGAAGATTCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAGAGCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGCATACGTAGGCAAAATGATGAAATCCAAAATATAGCTGATAAGATTCGTGATCATGAAAGAAATCACCATGCTATCATGGGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGCTTACTGTTTTTGGAGGAGCCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATGCTTTTATAGTGACTGATCATGCGGATTGTCGTCTTTTGAAACAATGTGCGAAGGAAGCAAATTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACACCATATGCTTCCTGAAACAGAACATCCATCTATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCTGGGAAGTGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCAAAGGATCCGAAATTTGAAGGAGGTCTACGCTGCAAATGGATGTAGAATGTTTTCTCGAGGTCAAGTGCAGAATGTTCTTCCTCCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCGTGCTGAAGCATCTGATGAACAAAGGATTGCCAGTGACTGTAAGAAAAATAAAAGAGTGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAGGTAAAAGTTTCACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATTTGCACACTGCTGAAAATAGTGCAACACCTTTGTCCTCTGTTGATGAGCTCGTGGAAGAAATTTCAGAGATCCAGAAAAAGATAGAAGAAGAACAAGTTTTGCTAGAGGGCCTTGAGCAAAAGGGGCTTGAAGCTGCAGGAAAAGCAGATGGTCTTAAAGTAAAGTTTGACAAACTGTGTGAATCAGCGAATGTTGAAATCGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAGAAAGGCAAAGGATCATTATGAGGGTGTTATGAAAAACAAGGTCCTAAGTGATATTGCGGAGGCAGAGGACCACTATCAGGAGCTTACAAAAAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCCCCGAGAATGAACTTGATTCATTGGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTATGCGTGAGAGTCAAAGGTACTCTGAATCAATCGACGATCTTAGGATGCTTTATAAGAAAAAAGAGCGTAAGATTATGAAAAGGCAGCAAGTTTACAAAACCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTGGAGTTACGAACCAGAAAGTTTCACAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGGAAGAAGGGAATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACGAAGCTGTTCGAGATACTAGGGGGCTTTCAGATGAACGACGGAAACAGCTATGTATTGATGTTGAAACTTTAGGGTTTTAG 2994 0.3985 MKRGRGESMGESSSRVSPTLQHPTAGIIKRLRLENFMCHTKHETEFGSHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRATTLKDFIKTGASNAVIQVEIQNEGEDAFKPEIYGHVINVERRISESASSTTLKDHQGRKVVSRKAELQEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITVAYEVIKELEAAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVDKLKERCSEKRDEIARMLEKTSQVKQMKENLNQSVSMAKKEAFQLERDCKSKTSNIQKMVRQLKMLKQQVQDIHEQHVKNTQAEDSNVEEKLKVLKDEVHAAELELKRLKEEDASLMESIRRQNDEIQNIADKIRDHERNHHAIMGRIRDLQQHQSNKLTVFGGAKVINLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNAFIVTDHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPHHMLPETEHPSILSVLQCDNHTVINVLVDLGSVERQVLVKDYEVGKVVAFEQRIRNLKEVYAANGCRMFSRGQVQNVLPPNKRQRTGRLCGSFEDEIEKLRAEASDEQRIASDCKKNKRVAEVKLEELDKYMSSIKRQCVNAGKSFTSKKLALEEEMHLHTAENSATPLSSVDELVEEISEIQKKIEEEQVLLEGLEQKGLEAAGKADGLKVKFDKLCESANVEIAALEKAESELVEIEKEMGSARKAKDHYEGVMKNKVLSDIAEAEDHYQELTKKRKESVEKASIICPENELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIMKRQQVYKTLRQKLDACQRALELRTRKFHRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNEAVRDTRGLSDERRKQLCIDVETLGF 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02981 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 333 IPR027417 -
Viun11g02981 997 Coils Coil 374 436 - -
Viun11g02981 997 Coils Coil 771 798 - -
Viun11g02981 997 Coils Coil 640 667 - -
Viun11g02981 997 Coils Coil 807 834 - -
Viun11g02981 997 Coils Coil 324 372 - -
Viun11g02981 997 MobiDBLite consensus disorder prediction 1 21 - -
Viun11g02981 997 Coils Coil 722 749 - -
Viun11g02981 997 Coils Coil 261 316 - -
Viun11g02981 997 Gene3D - 27 233 IPR027417 -
Viun11g02981 997 Coils Coil 215 242 - -
Viun11g02981 997 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 981 - -
Viun11g02981 997 SUPERFAMILY Smc hinge domain 421 603 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun11g02981 997 Pfam AAA domain 30 286 IPR038729 GO:0006302|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02981 Viun-Chr11 41176622 41193384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02981 21 990 Structural Maintenance of Chromosomes family AT5G07660 56.379 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02981 K22804 - gmx:100816916 1575.07