Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02980 ATGACTCAAGACAAAAGCAGGGAGTTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAGAGCATTTTCAAGGAAATTACTGTCGCATATGAAGTAATTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAACCGGATACCTACCTGCCAAGCTAAGATTGATCAACAACTGCATTTGGTTGATAAGTTGAAGGAAAGATGCTCTGAGAAGAGAGATGAGATTGCAAGAATGTTGGAGAAGACATCACAAGTTAAGCAAATGAAGGAAAACTTAAACCAATCTGTGTCCATGGCAAAAAAAGAGGCATTTCAACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTCAAACAACAAGTACAGGATATTCACGAGCAGCATGTAAAAAATACTCAGGCTGAAGATTCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAGAGCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGCATACGTAGGCAAAATGATGAAATCCAAAATATAGCTGATAAGATTCGTGATCATGAAAGAAATCACCATGCTATCATGGGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGCTTACTGTTTTTGGAGGAGCCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATGCTTTTATAGTGACTGATCATGCGGATTGTCGTCTTTTGAAACAATGTGCGAAGGAAGCAAATTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACACCATATGCTTCCTGAAACAGAACATCCATCTATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCTGGGAAGTGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCAAAGGATCCGAAATTTGAAGGAGGTCTACGCTGCAAATGGATGTAGAATGTTTTCTCGAGGTCAAGTGCAGAATGTTCTTCCTCCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCGTGCTGAAGCATCTGATGAACAAAGGATTGCCAGTGACTGTAAGAAAAATAAAAGAGTGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAGGTAAAAGTTTCACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATTTGCACACTGCTGAAAATAGTGCAACACCTTTGTCCTCTGTTGATGAGCTCGTGGAAGAAATTTCAGAGATCCAGAAAAAGATAGAAGAAGAACAAGTTTTGCTAGAGGGCCTTGAGCAAAAGGGGCTTGAAGCTGCAGGAAAAGCAGATGGTCTTAAAGTAAAGTTTGACAAACTGTGTGAATCAGCGAATGTTGAAATCGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAGAAAGGCAAAGGATCATTATGAGGGTGTTATGAAAAACAAGGTCCTAAGTGATATTGCGGAGGCAGAGGACCACTATCAGGAGCTTACAAAAAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCCCCGAGAATGAACTTGATTCATTGGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTATGCGTGAGAGTCAAAGGTACTCTGAATCAATCGACGATCTTAGGATGCTTTATAAGAAAAAAGAGCGTAAGATTATGAAAAGGCAGCAAGTTTACAAAACCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTGGAGTTACGAACCAGAAAGTTTCACAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGGAAGAAGGGAATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACGAAGCTGTTCGAGATACTAGGGGGCTTTCAGGCGGGGAACGTTCTTTTTCAACATTGTGCTTTGCGTTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTTGTTGATTTTGCGGAGGCACATGGATCACAGTGGATATTCATCACTCCACATGATACTAGCATGGTGAGGACAGGGGACAGGATAAAAAAGATGCAGATGGCTGCTCCTCGTTCTTGA 2697 0.3967 MTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITVAYEVIKELEAAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVDKLKERCSEKRDEIARMLEKTSQVKQMKENLNQSVSMAKKEAFQLERDCKSKTSNIQKMVRQLKMLKQQVQDIHEQHVKNTQAEDSNVEEKLKVLKDEVHAAELELKRLKEEDASLMESIRRQNDEIQNIADKIRDHERNHHAIMGRIRDLQQHQSNKLTVFGGAKVINLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNAFIVTDHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPHHMLPETEHPSILSVLQCDNHTVINVLVDLGSVERQVLVKDYEVGKVVAFEQRIRNLKEVYAANGCRMFSRGQVQNVLPPNKRQRTGRLCGSFEDEIEKLRAEASDEQRIASDCKKNKRVAEVKLEELDKYMSSIKRQCVNAGKSFTSKKLALEEEMHLHTAENSATPLSSVDELVEEISEIQKKIEEEQVLLEGLEQKGLEAAGKADGLKVKFDKLCESANVEIAALEKAESELVEIEKEMGSARKAKDHYEGVMKNKVLSDIAEAEDHYQELTKKRKESVEKASIICPENELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIMKRQQVYKTLRQKLDACQRALELRTRKFHRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNEAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRTGDRIKKMQMAAPRS 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02980 898 Gene3D - 699 897 IPR027417 -
Viun11g02980 898 Coils Coil 474 501 - -
Viun11g02980 898 Coils Coil 556 583 - -
Viun11g02980 898 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 897 - -
Viun11g02980 898 SUPERFAMILY Smc hinge domain 255 437 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun11g02980 898 Coils Coil 208 270 - -
Viun11g02980 898 Coils Coil 605 632 - -
Viun11g02980 898 Coils Coil 641 668 - -
Viun11g02980 898 Coils Coil 158 206 - -
Viun11g02980 898 Coils Coil 95 150 - -
Viun11g02980 898 Pfam RecF/RecN/SMC N terminal domain 190 893 IPR003395 -
Viun11g02980 898 Coils Coil 49 76 - -
Viun11g02980 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 891 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02980 Viun-Chr11 41175558 41190177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02980 1 898 Structural Maintenance of Chromosomes family AT5G61460 57.127 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02980 K22804 - gmx:100816916 1452.19