Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02979 ATGAAACGAGGAAGAGGAGAGAGCATGGGAGAATCCAGTTCTAGGGTTTCTCCAACTCTACAGCACCCCACAGCAGGCATCATCAAGCGGCTTCGTCTCGAGAACTTCATGTGCCACACCAAACACGAGACTGAGTTCGGAAGCCATGTCAATTTCATCACGGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGGGCAACCACTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCATGTTATCAATGTTGAACGCCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCAAGGAAGGAAAGTTGTTAGTCGAAAGGCAGAGCTTCAAGAGATCGTTGAACATTTTAATATTGATGTGGAGAATCCGTGTGTAATTATGACTCAAGACAAAAGCAGGGAGTTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAGAGCATTTTCAAGGAAATTACTGTCGCATATGAAGTAATTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAACCGGATACCTACCTGCCAAGCTAAGATTGATCAACAACTGCATTTGGTTGATAAGTTGAAGGAAAGATGCTCTGAGAAGAGAGATGAGATTGCAAGAATGTTGGAGAAGACATCACAAGTTAAGCAAATGAAGGAAAACTTAAACCAATCTGTGTCCATGGCAAAAAAAGAGGCATTTCAACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTCAAACAACAAGTACAGGATATTCACGAGCAGCATGTAAAAAATACTCAGGCTGAAGATTCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAGAGCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGCATACGTAGGCAAAATGATGAAATCCAAAATATAGCTGATAAGATTCGTGATCATGAAAGAAATCACCATGCTATCATGGGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGCTTACTGTTTTTGGAGGAGCCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATGCTTTTATAGTGACTGATCATGCGGATTGTCGTCTTTTGAAACAATGTGCGAAGGAAGCAAATTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACACCATATGCTTCCTGAAACAGAACATCCATCTATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCTGGGAAGTGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCAAAGGATCCGAAATTTGAAGGAGGTCTACGCTGCAAATGGATGTAGAATGTTTTCTCGAGGTCAAGTGCAGAATGTTCTTCCTCCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCGTGCTGAAGCATCTGATGAACAAAGGATTGCCAGTGACTGTAAGAAAAATAAAAGAGTGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAGGTAAAAGTTTCACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATTTGCACACTGCTGAAAATAGTGCAACACCTTTGTCCTCTGTTGATGAGCTCGTGGAAGAAATTTCAGAGATCCAGAAAAAGATAGAAGAAGAACAAGTTTTGCTAGAGGGCCTTGAGCAAAAGGGGCTTGAAGCTGCAGGAAAAGCAGATGGTCTTAAAGTAAAGTTTGACAAACTGTGTGAATCAGCGAATGTTGAAATCGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAGAAAGGCAAAGGATCATTATGAGGGTGTTATGAAAAACAAGGTCCTAAGTGATATTGCGGAGGCAGAGGACCACTATCAGGAGCTTACAAAAAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCCCCGAGAATGAACTTGATTCATTGGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTATGCGTGAGAGTCAAAGGTACTCTGAATCAATCGACGATCTTAGGATGCTTTATAAGAAAAAAGAGCGTAAGATTATGAAAAGGCAGCAAGTTTACAAAACCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTGGAGTTACGAACCAGAAAGTTTCACAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGGAAGAAGGGAATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACGAAGCTGTTCGAGATACTAGGGGGCTTTCAGGCGGGGAACGTTCTTTTTCAACATTGTGCTTTGCGTTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTTGTTGATTTTGCGGAGGCACATGGATCACAGTGGATATTCATCACTCCACATGATACTAGCATGGTGAGGACAGGGGACAGGATAAAAAAGATGCAGATGGCTGCTCCTCGTTCTTGA 3195 0.4038 MKRGRGESMGESSSRVSPTLQHPTAGIIKRLRLENFMCHTKHETEFGSHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRATTLKDFIKTGASNAVIQVEIQNEGEDAFKPEIYGHVINVERRISESASSTTLKDHQGRKVVSRKAELQEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITVAYEVIKELEAAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVDKLKERCSEKRDEIARMLEKTSQVKQMKENLNQSVSMAKKEAFQLERDCKSKTSNIQKMVRQLKMLKQQVQDIHEQHVKNTQAEDSNVEEKLKVLKDEVHAAELELKRLKEEDASLMESIRRQNDEIQNIADKIRDHERNHHAIMGRIRDLQQHQSNKLTVFGGAKVINLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNAFIVTDHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPHHMLPETEHPSILSVLQCDNHTVINVLVDLGSVERQVLVKDYEVGKVVAFEQRIRNLKEVYAANGCRMFSRGQVQNVLPPNKRQRTGRLCGSFEDEIEKLRAEASDEQRIASDCKKNKRVAEVKLEELDKYMSSIKRQCVNAGKSFTSKKLALEEEMHLHTAENSATPLSSVDELVEEISEIQKKIEEEQVLLEGLEQKGLEAAGKADGLKVKFDKLCESANVEIAALEKAESELVEIEKEMGSARKAKDHYEGVMKNKVLSDIAEAEDHYQELTKKRKESVEKASIICPENELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIMKRQQVYKTLRQKLDACQRALELRTRKFHRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNEAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRTGDRIKKMQMAAPRS 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02979 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 1057 IPR027417 -
Viun11g02979 1064 Pfam RecF/RecN/SMC N terminal domain 28 1059 IPR003395 -
Viun11g02979 1064 Coils Coil 771 798 - -
Viun11g02979 1064 Coils Coil 374 436 - -
Viun11g02979 1064 SUPERFAMILY Smc hinge domain 421 603 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun11g02979 1064 Coils Coil 640 667 - -
Viun11g02979 1064 Gene3D - 865 1063 IPR027417 -
Viun11g02979 1064 Coils Coil 807 834 - -
Viun11g02979 1064 Coils Coil 324 372 - -
Viun11g02979 1064 MobiDBLite consensus disorder prediction 1 21 - -
Viun11g02979 1064 Coils Coil 261 316 - -
Viun11g02979 1064 Coils Coil 722 749 - -
Viun11g02979 1064 Coils Coil 215 242 - -
Viun11g02979 1064 Gene3D - 27 232 IPR027417 -
Viun11g02979 1064 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02979 Viun-Chr11 41175558 41193383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02979 9 1064 Structural Maintenance of Chromosomes family AT5G61460 58.696 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02979 K22804 - gmx:100816916 1735.31