Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02972 ATGAATAACCATACGTGTTATGCATTAGCAATCCCAGCTATGGTGGTGCTTTTGCTGGCTCTGTGTGAAGCCACTTCAGGGTTAACACAACTTGAAGCTCTTTTTATGTGGAAACAAAGCCTACCCAACCAACCCATTTTGGAGTCGTGGGTGATGAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCGAGGCAGTGTCACTGTCATAAACTTGGCTTACACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCCAACCTTCTTCGTCTTGATCTCAAAGTAAACAACCTCACTGGTCTCATACCACAAAACATTGGGTTGCTTTCAAACCTTCAGTTTCTTGACTTTTCCGACAACTATCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTCACTCATGTTTTTGAGCTTGATGTGTCAAGAAATGATATATCAGGGGTGTTAGACCCTACCCTTTTTCCTGATGGATCAGACACCCCCAAAACTGGCCTCATTGGTATCAGAAACCTTCTCTTTCAGGACACTCTGCTAGGTGGAAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTTGATGGAAACAGCTTCAATGGCCCTATTCCTCCTTCTCTAGGCAACTGCACGCATTTAAGCATTCTCAGAATGCCTCAAAACCAACTCTCAGGTCCTATTCCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCTTTTTCGACAACAACTTAAATGGTACTGTTCCCCAGGAATTTGGAAACTTGTCTTCCTTGGTTGTACTGCATCTTGCTGTGAACAACTTCGTTGGTGAATTGCCACCAGAAGTGTGCAAAAGTGGGAAGCTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCAATTCCAAGAAGCCTTAGAAACTGTTCTTCCTTGTTCAGGGTTCGACTTGAATACAACCAGCTCACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCAGAACCTCACTTACATGGACTTCAGCTATAACAAGGTGGAAGGTGGCATTTCTGCAAATTGGGGTGCCTGCAAAAGCTTGCAATTTCTCAACATGGCTGGAAATAGAGTAAGTGGTCACATTCCAGCTGAGATTTTTCAGTTGGACCAACTCCAAGAACTTGACCTATCCTCCAACCAGTTGTTAGCACAGATTCCACCACAGATAGGAAATTCCTCCAACTTGTACAACTTAAATTTAAGTCACAACAATCTCTCTGGTGTGTTACCACCAGAAATTGGAAAACTTTCCAGTTTGAGGTCCTTAGATCTGTCCATGAACGTGCTGTTGGGATCAATCCCAAAGCAGATAGGGGACATCTCCAACTTGCAGAATTTAAATCTCAGCAACAACAAATTCAATGGCACAATCCCCTACCAAATTGGAAACCTTGCAGATTTACAATACTTTTTGGATTTGAGTTACAATTCACTTTCAGGAGTTATTCCCGGTGATCTTGGAAGGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATCTGTCAGGTTCTATTCCTCATTCCCTCAGCCAAGTGCTGAGTTTGTCAGAAATCAACCTCTCCAACAATAATTTGGAGGGTCCAGTTCCTGAAGGTGGCATATTCAACTCTTCTTATTCCCTGGATTTGAGCAACAACAAAGATCTCTGTGGCCACATTCAGGGCTTGAGTCCTTGTATTGTTTCTCTCTCCAAACCTGAGGGTGGATCAAGTAAAAGAAACAAGGCTGTGATCCCTATTGCAGCTTCCCTGGGAGGTGCTCTTTTTATCTCTCTGGTGTTAGTTGGGATTTTTTTCTTCAGCTGCAAGAGAAAATCAAGAGCTCCTAGGCAAAGAAACTCGTTCAGTAGACTGAATCCATTTTCAATTTGGTACTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCGAGAACTTTGATAGCCGATATTGCATTGGGGAAGGAGCACTGGGAAGAGTTTACAAAGCGGAGATGTCAGGAGGTGAAGTTTTTGCTGTAAAAAAGTTGAAGTGTGATTCAGACAACTTAGACTTTGAGAGAATAAAATCCTTTGAGAATGAGGTAAAAGCCATGACTGAAACACGCCACAGAAACATTGTGAAGCTTTATGGATTTTGCTCTGAAGGGGTTCACACCTTTCTGATTTATGAGTACATGGACAGTGGGAACTTATCTGACATGCTGAGAGATGAGAAGGGAGCATTGAAGCTGAATTGGCACAAAAGGGTTGAAATTATCACAAGTGTAGCAAACGCTTTGTCCTACATGCACCATGATTGCGCTTCACCTTTAATTCACAGAGACATATCAAGCAAGAACGTTTTGCTGTCATTCGATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCGAGGTTTCTGAAACCAGATTCTCCCCTTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGACCGAGAAATGTGATGTGTTCAGTTTTGGCGTTTTGGCTTTGGAGATTCTGACGGGAAAGCACCCTGGTGATCTTGTTTCCTACATGCAAAGTTGTAGTGAACAGAAAGTAAACATGAAAGAGATTTTAGACCCTCGTCTCATGCCTCCTTCCAAGAACAATATTTTGAAACAAGTGGATTTGATTGTCAACATGGCTCTTTCATGTTTAAAGACAAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCAGCTGCTTGAAATGGAGACTGCAGAGATATAA 2835 0.424 MNNHTCYALAIPAMVVLLLALCEATSGLTQLEALFMWKQSLPNQPILESWVMNSTATTQTPCSWRGITCDSRGSVTVINLAYTGLAGTLQNLNLSVFPNLLRLDLKVNNLTGLIPQNIGLLSNLQFLDFSDNYLNGTLPLSIANLTHVFELDVSRNDISGVLDPTLFPDGSDTPKTGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNSFNGPIPPSLGNCTHLSILRMPQNQLSGPIPPSIGKLTNLTDVRFFDNNLNGTVPQEFGNLSSLVVLHLAVNNFVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRNCSSLFRVRLEYNQLTGFADQDFGVYQNLTYMDFSYNKVEGGISANWGACKSLQFLNMAGNRVSGHIPAEIFQLDQLQELDLSSNQLLAQIPPQIGNSSNLYNLNLSHNNLSGVLPPEIGKLSSLRSLDLSMNVLLGSIPKQIGDISNLQNLNLSNNKFNGTIPYQIGNLADLQYFLDLSYNSLSGVIPGDLGRLSNLISLNISHNNLSGSIPHSLSQVLSLSEINLSNNNLEGPVPEGGIFNSSYSLDLSNNKDLCGHIQGLSPCIVSLSKPEGGSSKRNKAVIPIAASLGGALFISLVLVGIFFFSCKRKSRAPRQRNSFSRLNPFSIWYFNGRVVYRDIIEATENFDSRYCIGEGALGRVYKAEMSGGEVFAVKKLKCDSDNLDFERIKSFENEVKAMTETRHRNIVKLYGFCSEGVHTFLIYEYMDSGNLSDMLRDEKGALKLNWHKRVEIITSVANALSYMHHDCASPLIHRDISSKNVLLSFDLSAHVSDFGTARFLKPDSPLWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEILTGKHPGDLVSYMQSCSEQKVNMKEILDPRLMPPSKNNILKQVDLIVNMALSCLKTNPQSRPTMRSIAQLLEMETAEI 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02972 944 ProSiteProfiles Protein kinase domain profile. 669 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02972 944 SMART serkin_6 669 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02972 944 FunFam Predicted protein 174 262 - -
Viun11g02972 944 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Viun11g02972 944 Pfam Leucine rich repeat 467 528 IPR001611 GO:0005515
Viun11g02972 944 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Viun11g02972 944 FunFam Leucine-rich repeat receptor protein kinase MSP1 631 748 - -
Viun11g02972 944 Gene3D Ribonuclease Inhibitor 107 173 IPR032675 -
Viun11g02972 944 FunFam Leucine-rich repeat receptor-like protein kinase TDR 272 588 - -
Viun11g02972 944 SUPERFAMILY RNI-like 243 577 - -
Viun11g02972 944 FunFam MDIS1-interacting receptor like kinase 2 749 943 - -
Viun11g02972 944 Gene3D Ribonuclease Inhibitor 262 588 IPR032675 -
Viun11g02972 944 PANTHER LEUCINE RICH REPEAT KINASE 2 223 940 - -
Viun11g02972 944 FunFam Nuclear pore complex protein NUP107 28 167 - -
Viun11g02972 944 Gene3D Ribonuclease Inhibitor 174 261 IPR032675 -
Viun11g02972 944 SUPERFAMILY RNI-like 69 292 - -
Viun11g02972 944 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Viun11g02972 944 Pfam Protein kinase domain 674 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02972 944 Gene3D Phosphorylase Kinase; domain 1 633 748 - -
Viun11g02972 944 SMART LRR_typ_2 274 298 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 145 169 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 466 490 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 121 144 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 515 539 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 442 465 IPR003591 -
Viun11g02972 944 SMART LRR_typ_2 394 418 IPR003591 -
Viun11g02972 944 Gene3D Transferase(Phosphotransferase) domain 1 749 943 - -
Viun11g02972 944 SUPERFAMILY Protein kinase-like (PK-like) 642 938 IPR011009 -
Viun11g02972 944 Gene3D Ribonuclease Inhibitor 25 106 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02972 Viun-Chr11 41135442 41139205 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02972 9 842 Receptor kinase-like Gene Family AT4G08850 38.346 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun11g02972 Pkinase 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02972 - - var:108339503 1638.24