Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02970 ATGACCAACCAGAAGTCCTATGTTTGCCTTGCAAAGGCAATTCCAGCAACGTTGGTGCTTTTGCTGGCTATGTCTGAAGGCATTTCAGGACTAACACAAGCTGAAGCTCTTTTTAGGTGGAAACAAAGTCTACCTGATCAACCCATTTTGGATTCATGGGTGATGAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCAAGGCAGTGTCACTGTAATAAACTTGGCTTACACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCCAACCTTCTTCGTCTTGATCTCAAAGTAAACAATCTCACTGGCACCATACCACAAAACATTGGGGTCCTCTCAAACCTTCAGTTCCTTGACCTTTCCACCAACTATCTCAATGGAACTCTTCCTCTTTCCATTGCCAATCTCACTCAAGTTTTTGAGCTTGATGTGTCAAGAAATGATATATCAGGGGTATTAGACCCTACCCTTTTTCCTGATGGATCAGACACCCCCAAAAGTGGCCTCATTGGTATCAGAAACCTTCTCTTTCAGGACACTTTGCTAGGTGGCAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTACGCTAGCTCTTGATGGAAACAGCTTCAATGGCCCTATTCCTCCATCTCTAGGAAACTGCACGCATTTAAGCATTCTCAGAATGCCTCAAAACCAACTCTCAGGTCCTATTCCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGTTTTTTCACCAACAACTTAAATGGTACAGTGCCCCCAGAATTTGGAAACTTGTCTTCCCTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAGTTACCACCAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCAATTCCAAGAAGCCTTAGAAACTGTCCTTCCTTGTACAGGGTTCGACTTGAATACAACCGGCTCACAGGTTTTGCAGATCAGGATTTTGGAGTGTATCAGAACCTCACTTACATGGATTTCAGTCATAACAGGGTGGAAGGTGACCTCACTGCAAATTGGGGTGCCTGCAAAAACTTGCAATATCTCAGCATGGCTGGGAATGGAGTTAATGGCAACATTCCAAGTGAGATTTTTCAAAACCAACTACAAGAGCTTGACCTATCCTCCAACCATATATCAGGAGAGATTCCTTCACAGATTGAAAACTCCAACTTGTATGAATTAAATTTGAGTGGAAACAAACTTTCTGGCATGGTACCAGTAGAAATTGGAAAGCTTTCCAATTTGAGATCCTTAGACCTCTCTATGAACATGTTACTGGGACCAATCCCCAATCAGATAGGAGACATCTCCAACCTGCAGAATTTAAACCTTAGCAGCAATAACTTCAATGGCTCAATCCCCTACCAAGTTGGAAATCTTGCATCTTTACAAGATTTTTTGGACTTGAGTTACAATGCACTTTCGGGAGAAATTCCTTCTAATCTTGGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGACAGGTCCAATCCCTGACTCCCTTGGTAAAATGTTGAGTTTGTCATCCATCAACCTCTCCTACAACAATTTGGAGGGTCCAGTTCCTGAAAGTGGTGTATTCAACTCTTCTCATGCCGTGGATTTGAGCAACAACAAAAATCTATGTGGGAATGTTCAAGGTTTGAAGCCTTGTAATGTCTCTCTCACCAAACCTGGTGGTGGTGGATCAAGTAACAAAAAGGTTGTGATCCCAATAGTTGCATCCTTGGGAGGTGCTCTTGTTGTTTCTTTGGTGTGTGTTGGGATTGTTTTCTTTTGCTGCAAGAGAAAGTCAAGAGCTAGAAGACAGAAGAGTTCAATCAAAAAACTAAATCCATTTTCCATTTGGTACTTCAATGGCAGAGTTGTGTACGGAGACATAATCGAAGCCACAAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGAGCATTGGGAAAAGTTTACAAAGCAGAGATGAAAGGTCAAGTATATGCAGTAAAAAAGTTGAAGTGTGATGCAGAAAACTTAGACATAGAGAGCATAAAAACCTTTCAGCATGAGGTAGAAGCGATGTCAGAAACACGCCACCGAAACATAATAAAACTTTATGGATTTTGCTCTGAAGGGATGCACACATTTTTAATTTATGAGTATATGAACAGAGGGAACTTATCTGACATGCTGAAAGATGACAAGGAGGCGTTAGAACTAGATTGGCCTAAGAGGGTTGACATTGTGAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTTCTCCAGCTTTAATTCACAGAGACATATCAAGCAAGAACATTTTACTCTCCTACGATCTTTCGGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAACAGGACTCACCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTTGCATACACAATGGCGGTGACTGAGAAATGTGATGTGTTCAGCTTTGGAGTTTTGGCTTTTGAGGTTCTCACGGGAAAGCACCCTGGTGACCTTGTTTCCTACATACAAAGTACCAGTGAACAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGTCTCATGTCTCCTTCCAAGGACAATATTTTGAAGGAATTGGCATTGATTGCAAACCTTGCTCTTACATGTTTACAAACCAATCCTCAATCTCGACCAACTATGCGACACATAGCTCAACTCCTTGAAATGGATGCGTGCTGA 2829 0.4171 MTNQKSYVCLAKAIPATLVLLLAMSEGISGLTQAEALFRWKQSLPDQPILDSWVMNSTATTQTPCSWRGITCDSQGSVTVINLAYTGLAGTLQNLNLSVFPNLLRLDLKVNNLTGTIPQNIGVLSNLQFLDLSTNYLNGTLPLSIANLTQVFELDVSRNDISGVLDPTLFPDGSDTPKSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTTLALDGNSFNGPIPPSLGNCTHLSILRMPQNQLSGPIPPSIGKLTNLTDVRFFTNNLNGTVPPEFGNLSSLIVLHLAENNFVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRNCPSLYRVRLEYNRLTGFADQDFGVYQNLTYMDFSHNRVEGDLTANWGACKNLQYLSMAGNGVNGNIPSEIFQNQLQELDLSSNHISGEIPSQIENSNLYELNLSGNKLSGMVPVEIGKLSNLRSLDLSMNMLLGPIPNQIGDISNLQNLNLSSNNFNGSIPYQVGNLASLQDFLDLSYNALSGEIPSNLGKLSNLVSLNISHNNLTGPIPDSLGKMLSLSSINLSYNNLEGPVPESGVFNSSHAVDLSNNKNLCGNVQGLKPCNVSLTKPGGGGSSNKKVVIPIVASLGGALVVSLVCVGIVFFCCKRKSRARRQKSSIKKLNPFSIWYFNGRVVYGDIIEATKNFDNQYCIGEGALGKVYKAEMKGQVYAVKKLKCDAENLDIESIKTFQHEVEAMSETRHRNIIKLYGFCSEGMHTFLIYEYMNRGNLSDMLKDDKEALELDWPKRVDIVKGVASALSYMHHDCSPALIHRDISSKNILLSYDLSAHVSDFGTARFLKQDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEVLTGKHPGDLVSYIQSTSEQKINFKEILDPRLMSPSKDNILKELALIANLALTCLQTNPQSRPTMRHIAQLLEMDAC 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02970 942 FunFam Predicted protein 177 265 - -
Viun11g02970 942 Gene3D Phosphorylase Kinase; domain 1 630 748 - -
Viun11g02970 942 Pfam Leucine rich repeat 398 456 IPR001611 GO:0005515
Viun11g02970 942 SUPERFAMILY L domain-like 62 362 - -
Viun11g02970 942 FunFam Nuclear pore complex protein NUP107 31 170 - -
Viun11g02970 942 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Viun11g02970 942 ProSiteProfiles Protein kinase domain profile. 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02970 942 FunFam Leucine-rich repeat receptor-like protein kinase TDR 274 589 - -
Viun11g02970 942 SMART serkin_6 670 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02970 942 SMART LRR_typ_2 277 301 IPR003591 -
Viun11g02970 942 SMART LRR_typ_2 516 540 IPR003591 -
Viun11g02970 942 SMART LRR_typ_2 398 420 IPR003591 -
Viun11g02970 942 SMART LRR_typ_2 124 148 IPR003591 -
Viun11g02970 942 SMART LRR_typ_2 443 467 IPR003591 -
Viun11g02970 942 Pfam Leucine Rich Repeat 518 539 IPR001611 GO:0005515
Viun11g02970 942 Pfam Protein kinase domain 675 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02970 942 Gene3D Transferase(Phosphotransferase) domain 1 749 941 - -
Viun11g02970 942 SUPERFAMILY L domain-like 294 587 - -
Viun11g02970 942 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Viun11g02970 942 Gene3D Ribonuclease Inhibitor 29 112 IPR032675 -
Viun11g02970 942 FunFam Leucine-rich repeat receptor protein kinase MSP1 632 748 - -
Viun11g02970 942 PANTHER LEUCINE RICH REPEAT KINASE 2 98 235 - -
Viun11g02970 942 Gene3D Ribonuclease Inhibitor 113 171 IPR032675 -
Viun11g02970 942 SUPERFAMILY Protein kinase-like (PK-like) 644 938 IPR011009 -
Viun11g02970 942 Gene3D Ribonuclease Inhibitor 265 590 IPR032675 -
Viun11g02970 942 ProSiteProfiles Leucine-rich repeat profile. 398 420 IPR001611 GO:0005515
Viun11g02970 942 Gene3D Ribonuclease Inhibitor 176 264 IPR032675 -
Viun11g02970 942 FunFam MDIS1-interacting receptor like kinase 2 749 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02970 Viun-Chr11 41127980 41131666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02970 20 842 Receptor kinase-like Gene Family AT4G08850 39.479 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun11g02970 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02970 - - gmx:100814345 1584.31