Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02961 ATGAAACAACTGCTTGATGATGGATCGGTTACTGATAATTCACTGGCTGAAAATGTCACGGTTGATCCAGTTGTGCGGGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCAGCATGTTTTATATACTGGTCTTGGATGGGAAATTGGCAACGAAGGTCAAATACTCTTTACAGATCCACTTTGTACCCCAAAGACCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGTATCTCAGGTTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCTTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTAGGCAAGTCCAATCCAAAAGTAAATATCAGCCTGTCTGATGTGGAGAAAATAAAAGAACAGTACTCATGCTGTGCTGTAGATGAGTTAGCTTATCAAAAGACCCAATATTTTTGTCCTGTGGAGGAGCATACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACGGTTGGGGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTGGAAAATACTGTGGTTTGTGGTGGCACTTCATCTATGGCAGGTTTTGAAGAGAGATTTCAGAAAGAATCTAGCTTAAGTTCATCTGCCGTTCAACCCACCCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCATCCATCATTCACCGGAAATGCTTCTGA 993 0.4149 MKQLLDDGSVTDNSLAENVTVDPVVRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKTNKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKSNPKVNISLSDVEKIKEQYSCCAVDELAYQKTQYFCPVEEHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMAGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIIHRKCF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02961 330 PRINTS Actin signature 69 82 IPR004000 -
Viun11g02961 330 PRINTS Actin signature 94 113 IPR004000 -
Viun11g02961 330 PRINTS Actin signature 186 202 IPR004000 -
Viun11g02961 330 PRINTS Actin signature 14 36 IPR004000 -
Viun11g02961 330 Gene3D - 92 293 - -
Viun11g02961 330 SUPERFAMILY Actin-like ATPase domain 21 107 IPR043129 -
Viun11g02961 330 Gene3D Actin; Chain A, domain 4 134 221 - -
Viun11g02961 330 Pfam Actin 20 330 IPR004000 -
Viun11g02961 330 CDD NBD_sugar-kinase_HSP70_actin 26 137 - -
Viun11g02961 330 Gene3D - 17 324 - -
Viun11g02961 330 SMART actin_3 1 330 IPR004000 -
Viun11g02961 330 PANTHER ACTIN 21 323 IPR004000 -
Viun11g02961 330 SUPERFAMILY Actin-like ATPase domain 100 330 IPR043129 -
Viun11g02961 330 FunFam Actin-related protein 7 134 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02961 Viun-Chr11 41074870 41080198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02961 23 330 Cytoskeleton Gene Families AT3G12110 38.978 6.94e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02961 K16615 - gmx:100813266 640.958