Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun11g02960 | ATGAAACAACTGCTTGATGATGGATCGGTTACTGATAATTCACTGGCTGAAAATGTCACGGTTGATCCAGTTGTGCGGGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCAGCATGTTTTATATACTGGTCTTGGATGGGAAATTGGCAACGAAGGTCAAATACTCTTTACAGATCCACTTTGTACCCCAAAGACCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGTATCTCAGGTTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCTTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTAGGCAAGTCCAATCCAAAAGTAAATATCAGCCTGTCTGATGTGGAGAAAATAAAAGAACAGTACTCATGCTGTGCTGTAGATGAGTTAGCTTATCAAAAGACCCAATATTTTTGTCCTGTGGAGGAGCATACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACGGTTGGGGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTGGAAAATACTGTGGTTTGTGGTGGCACTTCATCTATGGCAGGTTTTGAAGAGAGATTTCAGAAAGAATCTAGCTTAAGTTCATCTGCCGTTCAACCCACCCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCATCCATCATTCACCGGAAATGCTTCTGA | 993 | 0.4149 | MKQLLDDGSVTDNSLAENVTVDPVVRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKTNKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKSNPKVNISLSDVEKIKEQYSCCAVDELAYQKTQYFCPVEEHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMAGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIIHRKCF | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun11g02960 | 330 | PRINTS | Actin signature | 69 | 82 | IPR004000 | - | |
| Viun11g02960 | 330 | PRINTS | Actin signature | 94 | 113 | IPR004000 | - | |
| Viun11g02960 | 330 | PRINTS | Actin signature | 186 | 202 | IPR004000 | - | |
| Viun11g02960 | 330 | PRINTS | Actin signature | 14 | 36 | IPR004000 | - | |
| Viun11g02960 | 330 | Gene3D | - | 92 | 293 | - | - | |
| Viun11g02960 | 330 | SUPERFAMILY | Actin-like ATPase domain | 21 | 107 | IPR043129 | - | |
| Viun11g02960 | 330 | Gene3D | Actin; Chain A, domain 4 | 134 | 221 | - | - | |
| Viun11g02960 | 330 | Pfam | Actin | 20 | 330 | IPR004000 | - | |
| Viun11g02960 | 330 | CDD | NBD_sugar-kinase_HSP70_actin | 26 | 137 | - | - | |
| Viun11g02960 | 330 | Gene3D | - | 17 | 324 | - | - | |
| Viun11g02960 | 330 | SMART | actin_3 | 1 | 330 | IPR004000 | - | |
| Viun11g02960 | 330 | PANTHER | ACTIN | 21 | 323 | IPR004000 | - | |
| Viun11g02960 | 330 | SUPERFAMILY | Actin-like ATPase domain | 100 | 330 | IPR043129 | - | |
| Viun11g02960 | 330 | FunFam | Actin-related protein 7 | 134 | 221 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun11g02960 | Viun-Chr11 | 41074640 | 41080198 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun11g02960 | 23 | 330 | Cytoskeleton Gene Families | AT3G12110 | 38.978 | 6.94e-66 | 210 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun11g02960 | K16615 | - | gmx:100813266 | 640.958 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun11g02960 | 11 | 41074640 | 41080198 | Viun11g02960 | 11 | 41074640 | 41080198 | ECH |