Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02936 ATGGGCAAAGCAAACACTTCTTGTTGTGTCTTTCTTCTATCCCTTTTCACTCTTTCATTCTTTGTGCCTCAAACCTCTGCAAATAGGCAACTTCAAACCCTCAACAAACTGCAAAATTCTAAGTTTTTCAGAGGAATTTCACAAACTGATAAGAGTGAGTTTGAGGTTGAAGAGGTTGTTCTTGATGGCATTGTTGATTCTCAAAAGGGTCTCAAAGAAAAAGATAGAATCGGAAGACTTCCAGGGCAACCCCAAGTGAGTTTTTCTCAGTATGGAGGGTATGTAACTGTGGATAAAGTTGCAGGTCGTGCCTTCTACTATTACTTTGTTGAAGCTCAACGTTCTAAACACTCACTCCCTCTTCTTCTTTGGCTCAATGGAGGCCCAGGATGTTCTTCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGATGGCAAAACACTGCACACAAATGCATTTTCATGGAACAGAGTTGCCAATGTTCTGTTCCTGGAGTCACCTGCTGGAGTAGGGTTTTCCTATTCAAACAAATCAACAGATTATGGTTCCAATGGAGATAAGAAAACAGCTGCAGATAATTATTTGTTCTTGGTGAATTGGTTGCAGAGATTTCCTGAGTATAAAAACAGAGATTTTTTTATTGCTGGAGAGAGCTATGCTGGGCATTATGTGCCTCAACTTGCACACACCATTCTTTATCATAACAAAAGGGCAAATAAAGCAATCATCAACTTCAAAGGAATCTTGATTGGAAATGCAGTGATCAACGAAGATACTGACTCGTCAGGACTGTATGATTATCTTGCAAGCCATGCAATCATCTCAGATGAAGCAGCTTATCTCAATAAAGCCTGTGATTCCTCATCAAAGATAGGGAGAAATCAGTGCGATGCAGCAGAATTAGAACTTGAGAAAAATATTGAATACATTGATTTATACAATATTTATGCTCCACTGTGCGACAGTACAAAACTCACACCCCAGCCAAAAAGATATTCTATTGTCACTGATCCATGTAGTGAGTATTATGTGCATGCATATATTAACAGAAAAGATGTTCAAGAGGCTCTCCATGCTAATGTCACCAATCTCAAACATGATTGGGAACCCTGCAGCGAAGTCATTACTAAGTGGGTAGATAGTGCTTCAACAGTTCTTCCACTTTTACACGAATTACTCAACAATGGCCTTAGAGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTGCCTATTACTTCAACCAAGTATTCGGTTAAGAAGATGGAGCTTCCCGTTGAAACTGTTTGGCACCCTTGGTTTTCCCATGGAGAGGTTGGTGGCTTTGCAGAAGTATATAAGGGAGGCCTAACATTAGCTACTGTGAGGGAAGCAGGGCATCAAGTGCCAAGTTACCAACCCGCAAGGGCCCTAACTTTGATAAAAAATTTCTTAGACGGCACTCCTCTTCCCGGTCCTCCCAAAAGACATAACTAG 1494 0.409 MGKANTSCCVFLLSLFTLSFFVPQTSANRQLQTLNKLQNSKFFRGISQTDKSEFEVEEVVLDGIVDSQKGLKEKDRIGRLPGQPQVSFSQYGGYVTVDKVAGRAFYYYFVEAQRSKHSLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHTNAFSWNRVANVLFLESPAGVGFSYSNKSTDYGSNGDKKTAADNYLFLVNWLQRFPEYKNRDFFIAGESYAGHYVPQLAHTILYHNKRANKAIINFKGILIGNAVINEDTDSSGLYDYLASHAIISDEAAYLNKACDSSSKIGRNQCDAAELELEKNIEYIDLYNIYAPLCDSTKLTPQPKRYSIVTDPCSEYYVHAYINRKDVQEALHANVTNLKHDWEPCSEVITKWVDSASTVLPLLHELLNNGLRVWIFSGDTDGRVPITSTKYSVKKMELPVETVWHPWFSHGEVGGFAEVYKGGLTLATVREAGHQVPSYQPARALTLIKNFLDGTPLPGPPKRHN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02936 497 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Viun11g02936 497 FunFam Carboxypeptidase 391 486 - -
Viun11g02936 497 Gene3D - 345 382 - -
Viun11g02936 497 Gene3D alpha/beta hydrolase 71 328 IPR029058 -
Viun11g02936 497 FunFam Carboxypeptidase 71 328 - -
Viun11g02936 497 SUPERFAMILY alpha/beta-Hydrolases 71 491 IPR029058 -
Viun11g02936 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 78 473 IPR001563 GO:0004185|GO:0006508
Viun11g02936 497 Gene3D - 391 486 - -
Viun11g02936 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Viun11g02936 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Viun11g02936 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Viun11g02936 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Viun11g02936 497 Pfam Serine carboxypeptidase 81 486 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02936 Viun-Chr11 40951210 40957602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02936 353 489 Calmodulin-binding Proteins AT2G22960 27.737 3.85e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02936 K16297 - gmx:100783864 818.535