Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02916 ATGGAAGAAGTTCAAGAGTCCCAACCCCAACCATCGCTTGGTCAAGAAGATGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAACCAGACCCAGAATTCAGTAGTAGCCCCCCAAAAGTTGACTCTGAAGTTGAGGTCCTTCACGAGAAGGTCACCAAACAAATCATTAAGGAAGGCCATGGCCAGAAGCCTTCCAAATATTCAACTTGTTTCTTCCATTACAGGGCTTGGTCTGAGAAAACACAGCACAAGTTTGAAGACACATGGCAGGAGCAAAGGCCAATTGAAATGGTCTTGGGTAAAGAGAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGTATGAAAGCTGGGGAGCGTGCATTGGTGCGTGTAGGCTGGGAGTTAGGATATGGAGAGGAAGGAAGCTTTTCTTTTCCAAACGTTCCACCCATGGCGGATTTAGTTTATGAAGTTGAACTCATTGGCTTTGATGAAACGAAAGAAGGGAAAGCTCGCAGTGATATGACCGTGGAAGAAAGGATCGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTATATCAGGAAGAAAAACTAGAGGAAGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTCGGGAAATATAGAGATATGGCTCTGGCTGTAAAGAATCCGTGCCATCTTAACATGGCAGCTTGTTTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGAGAGGAAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCAAGGGAAGATTTTCTTAAGGCACGTAAACATGCCCCTCAAGACAAAGCCATTGCAAGAGAACTGAAATTGCTTGCTGAACATGACAAGGCCGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTTCCTAAGACAAGAAACTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCAATGGCCTTGTCAGCCTCTTCAAGCGTGAAAGGCTTAAATCTGATTAA 1113 0.4376 MEEVQESQPQPSLGQEDENEVITESSAFVKGEPDPEFSSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSEKTQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARKHAPQDKAIARELKLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKTRNWLILIWQWLLSVFNGLVSLFKRERLKSD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02916 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Viun11g02916 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Viun11g02916 370 SMART tpr_5 183 216 IPR019734 GO:0005515
Viun11g02916 370 MobiDBLite consensus disorder prediction 1 47 - -
Viun11g02916 370 SUPERFAMILY FKBP-like 47 162 - -
Viun11g02916 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Viun11g02916 370 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g02916 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
Viun11g02916 370 SUPERFAMILY TPR-like 175 326 IPR011990 GO:0005515
Viun11g02916 370 Gene3D - 39 164 IPR046357 GO:0003755
Viun11g02916 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Viun11g02916 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Viun11g02916 370 FunFam Peptidylprolyl isomerase 168 296 - -
Viun11g02916 370 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 98 337 IPR039663 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02916 Viun-Chr11 40860127 40863742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02916 48 336 Calmodulin-binding Proteins AT5G48570 32.770 5.70e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02916 - - gmx:100790587 710.679