Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02909 ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCTTCCAGAGAGAAAGAGAAAGAGAAAGAGAGAAGCAGCATCAAGATCCAGGAGTTTCAGTACAGCGACCTTGAAGCTGCTACCAATGGCTTCTCCGACCGGAAGCTTCTCGGAAAAGGGAGTCACGGGTATGTGTACAAGGCGGTGGTTCGGGGGCGTCCCGTGGCGGTGAAGCGGCCGTCGCGGCCGCATCATCACGGGGTTGTTGTTCCTCGACCGGTGGTGTCGTCTTCCGCGCCGGTGGAGATCACGAACGAGGTGGACAACGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGGACCCTTTACGATGTTCTTCATTCCTCTCCAAGGCCTCCCAATTGGGGTAGGAGGATTCGTCTGGCTCTGCAAACCGCGAAAGCCATTGACACGCTTCACTCCTCGACGCCGCCGGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGGAGCTACAATGCGAGATTAGGGGATTTTGGTTTGGCTCTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGTTACCTTGACCCTTGTTATGTGACTCCTGATAATTTGAGCACCAAAACCGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGAAAAGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCCCTCATAAAAAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCCAAGGATCCTGTTGTGAGGAAGCAATTGGCTGTGATTGCTGCAAAGTGTGTGAGGTCTTGCAGAGAGAGAAGACCCTCCATGAAGGAGGTTGTTACATGGCTCTGTGGGTTGTGTAAACTGGTGCCTCTTCATTCCTGGAATGGTTTCAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCCGTTGAAGCAAGGAACGGTGAATTCGGTGTGGAAGAGGGAAAGTTTGAAGCTTTGGATGGAAGACTTTCAAAGTCTGCAATGAGGTATTCCAGAAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGATTTGATGGCCACCACTGAGGAGCCTGAATTTCTGAGAGATTCTGATGGGGTGGTGGAGCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAAGCCATGTGGCAGTGACAAGGACGCATTTGGCTTGAGTAAAGGCCAGATTGTTGTTGGTCAGAATGAGACCACTTCAAAACAGAACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTTGAATTTGAACTCTCTGGTTGCTGAGGTTGTCTAG 1515 0.4944 MGYLYLSCRAESAVSTSDSVASSSREKEKEKERSSIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVVPRPVVSSSAPVEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEFGVEEGKFEALDGRLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDSDGVVEHSSKSAEQVSSSRFGSGRYSIRGRNLYKPCGSDKDAFGLSKGQIVVGQNETTSKQNEVSGSNSKNLNLNLNSLVAEVV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02909 504 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Viun11g02909 504 Pfam Protein tyrosine and serine/threonine kinase 57 332 IPR001245 GO:0004672|GO:0006468
Viun11g02909 504 Gene3D Phosphorylase Kinase; domain 1 22 143 - -
Viun11g02909 504 Gene3D Transferase(Phosphotransferase) domain 1 144 342 - -
Viun11g02909 504 FunFam Serine/threonine-protein kinase-like protein 144 347 - -
Viun11g02909 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Viun11g02909 504 FunFam Serine/threonine-protein kinase-like protein At1g28390 22 143 - -
Viun11g02909 504 MobiDBLite consensus disorder prediction 13 34 - -
Viun11g02909 504 ProSiteProfiles Protein kinase domain profile. 53 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02909 504 PANTHER OS01G0253100 PROTEIN 15 336 - -
Viun11g02909 504 SMART serkin_6 53 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02909 504 SUPERFAMILY Protein kinase-like (PK-like) 33 334 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02909 Viun-Chr11 40835417 40837526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02909 41 334 Receptor kinase-like Gene Family AT3G59420 44.667 7.23e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun11g02909 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02909 - - vum:124832395 862.448