Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02892 ATGGAGAAGTACCTGAGAGAAAACTTCAGCGTCCAGCCGAAGAACCCTTCCGAGTCCGCCCTCCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAAAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGAAGCGGAACACAAGCGTAGGAAGCTCCAGGAAAAAATACGGGTGGCTCTCTATGTTCAAAAAGCAGCGTTGCATTTTATTAACGCTGGTAACCGTCGTGTTGTTGATGGTGTTGACGGCGGAGGTAAAGGTGGTGGTGTCGGCGGCGACACCGATGGTAGTTATATGCTCTCAAAAGAGACTCGGGAAGCAGGTTTCGAAATTGAGCCCGACGAATTAGCCTCCATCGTTCGATCCCATGACAAGAAATGTTTAGAACGCTATGAAGGAGTGGGAGGAGTAGCAAGGGTTGTTCGTGTGTCCTTGCAAGAGGGCGTTATTTCGGTAGATGCTGAGCACAGACAAAATATCTATGGTTGTAACCGCCATGCCGAGAAGCCCCCCAGAAGCTTTTGGATGTTCGTTTGGGATGCAATGCAGGACTTAACTCTAATCATCCTTATGGCATGTTCTTTCGTTTCAGTTGGTGTTGGAATTGTAACCGAAGGTTGGCCAAAGGGTATGTACGATGGAGTGGGAATCATACTGTCTATACTTTTAGTGGTGTTTGTCACTTCAATCAGCGACTATAAACAGTCTTTGCAATTTAAGGACTTGGATAAAGAAAAGAAAAATGTGAGCATTCAAGTTACAAGAGACGGCAGAAGGCAAAAAGTTTCAATTCATGATCTAGTGGTAGGAGACATAGTCCATCTTTCAATAGGAGACGTAGTTCCTGCAGATGGGTTATTGATATCTGGTTTCGGCTTATTAATAGACGAATCAAGTCTATCAGGTGAGAGCGACGCTGTGAATGTTGATCATCGGAAGCCCTTTCTTCTTGCCGGGACCACAGTGCAAGATGGGTCTGCAAAGATGTTGGTCACGTCCGTTGGTGTGAGGACGGAATGGGGAAGATTGATGGATACTCTGAACGAAGGAGGAGATGATGAGACACCACTTCAGGTCAAACTAAACGGAGTTGCAACCATTATTGGTAAGATAGGCTTGGGTTTTGCCCTTCTCACATTCATAGTTCTGACGAGCAGGTTTTTGTGGGGGAAAATAGTTCACCATGAGATCACAAAATGGTCCCTCAATGATGCATCCGAGCTTCTCAATTTCTTTGCCACCGCTGTCATTATCATTGTTGTGGCAGTTCCCGAGGGGCTTCCTCTGGCAGTCACACTGAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTGGTCAGGCATCTCTCCGCATGCGAGACTATGGGTTCAGCAAGCTGTATTTGCACTGATAAAACAGGGACTTTGACTACAAATCACATGGTTGTAGACAAAATATGGATTTGTGGACAAACTAAGGCCATTAAAAGCGGCAACAGTGAAAATGTGTTGAAGTCCTTCATTTCTGAACAAACATTTGATCTTCTTTTGCAATCCATATTCCAGAATACTGGCTCGGAGATAGTCAAAGGGCTAGATGGAAAGAACAAGATCATGGGTACTCCCACAGAATCCGCTTTGTTGGAATTTGGCTTGCTTTTGGGGGGTGATTCCAAGTTTTATAACGACAAGTATAAAATAGTGAAGGTTGAACCTTTCAATTCAATCAGAAAAAAGATGTCAGTGCTAGTGGCTCTTCCCGGTGGACCCAACAAGTATCGAGCATTCTGCAAAGGAGCATCAGAATTGGTCGTGGAAATGTGCGACAAAGTTGTCAACGCAGACGGAAAAGTGGTCAATTCGAACGAACAACAAAAGAGTAGCATCACAGAAGTTATCAACGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCATTGCCTACAAGGACACTGAAGGATCTTCTGAACGTGATCGTATTCCCGAGGACAAATACACGTTGATAGCTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTCAAGACTTGTTTAGAAGCTGGCATTATGGTTAGAATGGTGACTGGTGACAACATAAACACTGCCAAAGCAATAGCTAGAGAATGCGGTATATTTACAGATGGAATTGCGATAGAGGGACCAGATTTCCGGAACAAATCCCAGCAAGAATTGGAAAAGATAATACCCAAAATACAGGTAATGGCCCGATCCTTGCCCCTTGACAAGCACAAATTAGTGACCCATTTGAGGGAGGATTTTAATGAGGTTGTGGCAGTAACTGGGGATGGGACCAATGATGCCCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGCATTGCAGGGACAGAGGTTGCCAAAGAGAACGCTGATGTGATTGTAATGGATGATAACTTCTCAACCATAGTGAAGGTTACCAGATGGGGTCGTGCTGTTTATATTAATATACAAAAGTTTGTTCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTCGTTTCAGCCTGTGTGTCAGGCTCTGCTCCTCTCAGTGCTGTCCAAATGCTTTGGGTAAACATGATCATGGACACTCTCGGCGCGTTGGCACTGGCTACAGAACCTCCTCATGATGGCCTGATGAAGAGGCCACCTATCGGAAAAAACTCTAAATTCATCACCAGGGTCATGTGGAGGAATATAATTGGTCAGAGCATCTATCAAATTATCGTCCTTTTGCTTCTCAAATTTCGTGGCAAAAAGATTCTCATGCTCGATGAACATGACGATACTACCTTGCTTCTCAATACCGTCATTTTCAACAGCTTTGTATTTTGTCAGGTGTTCAACGAGATAAACAGCCGTGACATGGAGAAGATCAATGTGTTCGAAGGCATGTTAAGCAGCTGGGTGTTCCTGATAGTGATGGGCATAACGATCTGCGCTCAAGTGATGATAGTTGAATGTCTGGGTGCTTTTGCTCAAACGGTACCGCTGAGCCGTGAACTGTGGTTAGCGAGCGTGATGATTGGTGCGGTGAGTTTAGTCATAGCTGTTGTCATTAAATGCATTCCAGTTCCATCCAGCACCTACGTCGCCACCCACCATGACGGTTACGAACAGCTCCCCACTGGCCCTGAGCTCGCATGA 3174 0.4568 MEKYLRENFSVQPKNPSESALRRWRSAVSVVKNPRRRFRMVANLAQRAEAEHKRRKLQEKIRVALYVQKAALHFINAGNRRVVDGVDGGGKGGGVGGDTDGSYMLSKETREAGFEIEPDELASIVRSHDKKCLERYEGVGGVARVVRVSLQEGVISVDAEHRQNIYGCNRHAEKPPRSFWMFVWDAMQDLTLIILMACSFVSVGVGIVTEGWPKGMYDGVGIILSILLVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDGRRQKVSIHDLVVGDIVHLSIGDVVPADGLLISGFGLLIDESSLSGESDAVNVDHRKPFLLAGTTVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFIVLTSRFLWGKIVHHEITKWSLNDASELLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICGQTKAIKSGNSENVLKSFISEQTFDLLLQSIFQNTGSEIVKGLDGKNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSIRKKMSVLVALPGGPNKYRAFCKGASELVVEMCDKVVNADGKVVNSNEQQKSSITEVINGFASEALRTLCIAYKDTEGSSERDRIPEDKYTLIAIVGIKDPVRPGVKEAVKTCLEAGIMVRMVTGDNINTAKAIARECGIFTDGIAIEGPDFRNKSQQELEKIIPKIQVMARSLPLDKHKLVTHLREDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFSTIVKVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLSAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGKNSKFITRVMWRNIIGQSIYQIIVLLLLKFRGKKILMLDEHDDTTLLLNTVIFNSFVFCQVFNEINSRDMEKINVFEGMLSSWVFLIVMGITICAQVMIVECLGAFAQTVPLSRELWLASVMIGAVSLVIAVVIKCIPVPSSTYVATHHDGYEQLPTGPELA 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02892 1057 Pfam E1-E2 ATPase 255 448 - -
Viun11g02892 1057 PRINTS H+-transporting ATPase (proton pump) signature 772 788 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 PRINTS H+-transporting ATPase (proton pump) signature 804 829 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 PRINTS H+-transporting ATPase (proton pump) signature 630 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 Coils Coil 40 60 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 301 315 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 470 484 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 772 791 - -
Viun11g02892 1057 PRINTS P-type cation-transporting ATPase superfamily signature 796 808 - -
Viun11g02892 1057 SFLD C1.7: P-type atpase like 452 824 - -
Viun11g02892 1057 CDD P-type_ATPase_Ca_PMCA-like 159 905 - -
Viun11g02892 1057 NCBIfam HAD-IC family P-type ATPase 222 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 NCBIfam HAD-IC family P-type ATPase 567 718 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 NCBIfam HAD-IC family P-type ATPase 738 855 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun11g02892 1057 Gene3D - 153 353 - -
Viun11g02892 1057 Pfam haloacid dehalogenase-like hydrolase 468 786 - -
Viun11g02892 1057 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 476 682 IPR023299 GO:0000166
Viun11g02892 1057 SUPERFAMILY Calcium ATPase, transmembrane domain M 138 1034 IPR023298 -
Viun11g02892 1057 Gene3D - 185 1032 - -
Viun11g02892 1057 FunFam Calcium-transporting ATPase 232 353 - -
Viun11g02892 1057 SFLD p-type atpase 452 824 IPR044492 -
Viun11g02892 1057 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Viun11g02892 1057 Gene3D - 480 677 IPR023299 GO:0000166
Viun11g02892 1057 SUPERFAMILY HAD-like 469 877 IPR036412 -
Viun11g02892 1057 SMART Cation_ATPase_N_a_2 135 207 IPR004014 -
Viun11g02892 1057 Pfam Cation transporter/ATPase, N-terminus 139 202 IPR004014 -
Viun11g02892 1057 SUPERFAMILY Calcium ATPase, transduction domain A 255 351 IPR008250 -
Viun11g02892 1057 Gene3D - 467 817 IPR023214 -
Viun11g02892 1057 ProSitePatterns E1-E2 ATPases phosphorylation site. 472 478 IPR018303 -
Viun11g02892 1057 FunFam Calcium-transporting ATPase 480 677 - -
Viun11g02892 1057 NCBIfam calcium-translocating P-type ATPase, PMCA-type 128 1034 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun11g02892 1057 FunFam Calcium-transporting ATPase 16 76 - -
Viun11g02892 1057 Pfam Cation transporting ATPase, C-terminus 857 1031 IPR006068 -
Viun11g02892 1057 FunFam Calcium-transporting ATPase 667 817 - -
Viun11g02892 1057 Gene3D - 16 76 - -
Viun11g02892 1057 FunFam Calcium-transporting ATPase 789 1036 - -
Viun11g02892 1057 PANTHER CATION TRANSPORTING ATPASE 107 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02892 Viun-Chr11 40764589 40769606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02892 57 1054 Primary Pumps ATPases AT3G57330 67.467 0.0 1355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02892 K01537 - gmx:100805063 1774.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02892 11 40764589 40769606 Viun11g02892 11 40764589 40769606 ECH