Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02888 ATGGCCAAGAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTTTGAGGGATCCCACACAAGATAAGGATAAAAGGAGGAAATGGATATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTACAGCTCCACTTCCATCTAAAGAGACAACACTAAGCGAAGCAGAGGAAGAACAAAGCAAACATGCTTTAACAGTGGCCATTGCCTCAGCAGCAGCTGCTGAAGCTGCTGTTACTGCTGCACATGCTGCTGTTGAGGTTGTTCGCCTCACTGGGGTCTCACAATCTTCCCTTATTTGCAAGGAAAAGTCAGAAGAATCTCAACCTCTCAAAACTAGTAATGCTGCTCCTCAATTCACATACCAGTGCAAGAGGGACATTCAAGAATCTGCTGCAGTTATCAGAATTCAAACTGCATTTAGGGGTTACCTGGCAAGGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAACTACAAGCTATCATTCGTGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTTAAGAGCTTGCAGTCCATTGTGAGCATCCAATCACAGGTCTGTGCAAGGAGGCTCCAAATGGTTGAAGGGAGATGTGACTACAATGAAAATGATGAGATGCATGATTCAAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGTGATGAGAGCACTCCATCAAAGGAAGAGTTAGACACCTCTTGCATAAGCATGAAAGAAACAGTTCTCAAGAGAGAAAGAATAAAAGAATACTCATTTAACCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGATACTGGCTAGAGCAGTGGGTGGATACACAACTTTCAAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTTAGCTCTCATGCTAGGAGTGGGGAAGAATATGGAAGCAGACAACTTAAGGTGAGAAGTATTAACAGGCAAAACCCAGTTGAAGGATTGGATTCTCCAACACTTGGTTCAAGAAGATCTTTTCCTCACAGGAGACAGTGTTCTGTGGGAGAAGACCAATCATTTTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCAAAAGCAAAAGCAAGATCAACAAGCTCACCAAAAATAAGGACAGGGGGGAATGTGGACATGAATTCTGATAGTTATTCACCATGCAAGAAAAAGCTATCCATTGCATCTTCCATTAACAGTGAGGTTCTTAGTGGTGGTAGGATGGCCAAGTTTAGTGGTAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTTCAGTGCCTATAAAATCAAGCAGAACTATCAAGGATCTCAGTATTAATTCAGATTGTTCACTGCCTAATTGGGGTCCTCAAGGTTCCTTCAAATGA 1401 0.4233 MAKKKSWFSLVKRLFLRDPTQDKDKRRKWIFGRLKSKRLPSITAPLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAHAAVEVVRLTGVSQSSLICKEKSEESQPLKTSNAAPQFTYQCKRDIQESAAVIRIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSQVCARRLQMVEGRCDYNENDEMHDSKDKIIRMDSNSERKCDESTPSKEELDTSCISMKETVLKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSHARSGEEYGSRQLKVRSINRQNPVEGLDSPTLGSRRSFPHRRQCSVGEDQSFSSSPATPAYMAATESAKAKARSTSSPKIRTGGNVDMNSDSYSPCKKKLSIASSINSEVLSGGRMAKFSGNQQRSPSFKGLSVPIKSSRTIKDLSINSDCSLPNWGPQGSFK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02888 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 173 IPR027417 -
Viun11g02888 466 SMART iq_5 129 151 IPR000048 GO:0005515
Viun11g02888 466 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Viun11g02888 466 MobiDBLite consensus disorder prediction 323 397 - -
Viun11g02888 466 Pfam Protein of unknown function (DUF4005) 351 432 IPR025064 -
Viun11g02888 466 Pfam IQ calmodulin-binding motif 132 151 IPR000048 GO:0005515
Viun11g02888 466 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Viun11g02888 466 MobiDBLite consensus disorder prediction 347 364 - -
Viun11g02888 466 MobiDBLite consensus disorder prediction 372 397 - -
Viun11g02888 466 Gene3D - 129 180 - -
Viun11g02888 466 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02888 Viun-Chr11 40745190 40748305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02888 1 466 IQD Protein Family AT5G13460 45.492 3.42e-110 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02888 - - gmx:100800192 739.184