Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02887 ATGGCAGAGAGTGTAGTTTCCTTTGTTTTGGATCACTTATCTCAGCTTGTGGCACGCGAAGCTAACTTGCTGTATGGCGTGGAGGACAGGATCCAGTCCCTGCAGCACGAGCTTCAAATGATGAAAGAGCTGCTCAGTAGCACAAGGAGCAAGAAGGGAATGGAACATACAGTGTTGAACCAAATCAGAGATGTGTCCCACTTAGCTGAGGATCTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTGGGGAGGATGCTCCGTGGCTTTCACCAAGCAAGGTTGCTCCATGACGTAGCCGAAAAAATAGACAAGATCAAAACCACTCTCAACGAAATACGCGAAAACAAGGACAAATATGATGCTTTCAAAGAAACCAGTAATCAATCCGCAGCAGAAGAAGAGGAAGAGGAGAAAAGGGCGCAATCAGTGCAGAAGCTAAGAAGAAATGTGGAGGAAGAAGATGTGGTTGGCTTTGTCCAGGACTCCAAGGATGTCATCAACCGACTCCTCGAAGGTGGTTCAAACCGTAAAGTAGTCTCTATCATTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAACAGCACCCAGGTGAAGCAACACTTCATGTGTCACGCGTGGGTTTATGTGTCAAACGAGTGCAGACTTAGGGAGCTTTTGCTTGACCTTCTTAAGCGTTTGATGCCAGATTTTGAACAGCAATGCAGAGGCAAAAAGAAAGGTAAGAAAAACACTCTAGACATTAATAGCTTGAGTGAGGAGGAGCTGAAGAAACATGTGTGGAACTGCTTGGAGAGGAAAAGGTATCTTGTGGTGGTAGATGACCTGTGGAAAAGGCAGGATTGGGACGAGGTGCAAGATGCTTTTCCAGACAACAACAGAGGTAGCAGAATATTGATCACAAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGCCCATGATGTTCCTCACTATCTTCAATTCCTCAATGAAGAAGAAAGTTGGGAGTTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATCTGGAGTCTCTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGTTTACCACTCTCCATCATTGTCTTGGGAGGGCTGTTAGCCAGCAAGGAAAAGTCACATAGAGAATGGTCTAAAGTGGTGGGTCATGTTAATTGGTATCTTACTCAGGACGAGACCCAAGTGAAGGATATAGTTCTCAATCTCAGTTACGATAACTTGCCAAGGAAATTAAAACCATGTTTTCTCTATCTTGGGATATTTCTTGAAGACTCTGAAATCCCTGTTAGACCATTATTGCAAAAATGGGTTGCTGAGGGTTTTATACAAGATACAGGGAGCAGAGACCCAGATGACGTTGCAGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTCCAAGTAGCAAAAGTGGAGACTAATGGATGCGTGGAGACTTGCCAGGTTCATGATCTTCTTCGAGATCTTTGCATTTCAGAGAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACAATAACATTCTAATCCCTACAAAACCCCGCAGACTGTCCATTCAGAGTGACATGGGTCACTACATTTCTTCAAGCAACAATGACCATTCTTGTATCCGTTCCCTGTTTTTCTTTGGGCCACTTTATGATGTTCATGGGAGAGAGTGGAAATGGCTTTTGGACGACTTCAAACTGGTTCGAGTGTTAGAGTTTGGACCTAACAACTTCCTAAAGATCCCTTCCAAACTAGGGAACTTCATCCACTTAAGGTACTTGAGAATGGATGCAACATATATTAGATTTGTTCCAGATTCAATACTTAACCTTTGGAATCTACAAACTATAGACTTTGGTCCTTGGGTGTATAAGATTCCAATCTCTTTCCCTATCCAGATGTGGAAACTCAAATATTTAAGACATTTGAGTACACTTGGGCCTATCAGGCTACGAGGCAGTTGTTCAGGATCAGATGAGAAGATGTGGAATCTTCAAACCATCTCTGCCCTTTTACTCAACAGACAAGCAACATCTCTGATAAAAAAAGAAACTTTCCCCAATCTTAAGAAGATAGGGTTGAAAGTGGCTCATGCATACGAAGGAGAATTGCCCAAATTATTGCAAACTCTACAGCAATCAAGTCATTTGAATGAGTTCGAGATTCACTTCGAAGATAGGTATGAAAGGCGCAATGGATGCACGCCCCAAGAACTATTTCAAAGCCTAGGGCACTTCAGTAGTATAACTGTCTTAGAGATTCAGAATCATTCGGAGCTTCTAACCTCTGTGGTCACATTTCCTCCGAACGTTACAGAATTAACGTTGTCATGTATTATGTGCATTACTGATGAGGGGATGATTGGTTTGGAAAATCACACCAAACTCAAAATTTTGAGACTTTGGGGATATGCATTTAGGTTTGGGGATTCCTTTGACCTGAATTGCACCAGAGGTGGCTTCCCACAACTGGAAGTGTTTCAAATGACATATATGAGAGTTGGAAAGTGGAAATTAGAAAATGGTGCAATGTTGAAGCTTCAGAGTCTCATCATCAACAAGTGTAAAATGTTAGATGATCTCCCAAAGGAATTGTGGTGTTTGAGTGGCTTGAAAAAAGTGCATGTAACCAATCCTTCAAATCAATTGGGTTGCATGTTAAGAAATTTGGAATTAAACAATGGGGTTCAATTAGTCATAGATGAACCTCAAATTGTTATTTGTTGA 2760 0.425 MAESVVSFVLDHLSQLVAREANLLYGVEDRIQSLQHELQMMKELLSSTRSKKGMEHTVLNQIRDVSHLAEDLIDTFVAKVSIYKRRTILGRMLRGFHQARLLHDVAEKIDKIKTTLNEIRENKDKYDAFKETSNQSAAEEEEEEKRAQSVQKLRRNVEEEDVVGFVQDSKDVINRLLEGGSNRKVVSIIGMGGLGKTTLARKVYNSTQVKQHFMCHAWVYVSNECRLRELLLDLLKRLMPDFEQQCRGKKKGKKNTLDINSLSEEELKKHVWNCLERKRYLVVVDDLWKRQDWDEVQDAFPDNNRGSRILITSRLKEVALHAAHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLESLGKQMVQSCRGLPLSIIVLGGLLASKEKSHREWSKVVGHVNWYLTQDETQVKDIVLNLSYDNLPRKLKPCFLYLGIFLEDSEIPVRPLLQKWVAEGFIQDTGSRDPDDVAEDYLYELIDRSLVQVAKVETNGCVETCQVHDLLRDLCISESKEDKVFEVCTDNNILIPTKPRRLSIQSDMGHYISSSNNDHSCIRSLFFFGPLYDVHGREWKWLLDDFKLVRVLEFGPNNFLKIPSKLGNFIHLRYLRMDATYIRFVPDSILNLWNLQTIDFGPWVYKIPISFPIQMWKLKYLRHLSTLGPIRLRGSCSGSDEKMWNLQTISALLLNRQATSLIKKETFPNLKKIGLKVAHAYEGELPKLLQTLQQSSHLNEFEIHFEDRYERRNGCTPQELFQSLGHFSSITVLEIQNHSELLTSVVTFPPNVTELTLSCIMCITDEGMIGLENHTKLKILRLWGYAFRFGDSFDLNCTRGGFPQLEVFQMTYMRVGKWKLENGAMLKLQSLIINKCKMLDDLPKELWCLSGLKKVHVTNPSNQLGCMLRNLELNNGVQLVIDEPQIVIC 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02887 919 CDD RX-CC_like 2 121 IPR038005 -
Viun11g02887 919 Pfam NB-ARC domain 170 419 IPR002182 GO:0043531
Viun11g02887 919 Coils Coil 140 160 - -
Viun11g02887 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 432 IPR027417 -
Viun11g02887 919 Pfam Rx N-terminal domain 5 81 IPR041118 -
Viun11g02887 919 SUPERFAMILY L domain-like 496 901 - -
Viun11g02887 919 Gene3D Ribonuclease Inhibitor 547 913 IPR032675 -
Viun11g02887 919 Gene3D - 5 98 - -
Viun11g02887 919 PRINTS Disease resistance protein signature 367 381 - -
Viun11g02887 919 PRINTS Disease resistance protein signature 185 200 - -
Viun11g02887 919 PRINTS Disease resistance protein signature 274 288 - -
Viun11g02887 919 PRINTS Disease resistance protein signature 755 771 - -
Viun11g02887 919 FunFam Probable disease resistance protein At5g66910 332 419 - -
Viun11g02887 919 FunFam Probable disease resistance protein At1g61300 144 327 - -
Viun11g02887 919 Coils Coil 31 51 - -
Viun11g02887 919 Coils Coil 102 122 - -
Viun11g02887 919 Gene3D - 418 508 IPR036388 -
Viun11g02887 919 Gene3D - 332 417 IPR042197 -
Viun11g02887 919 PANTHER DISEASE RESISTANCE PROTEIN RP 31 866 IPR044974 GO:0006952
Viun11g02887 919 Gene3D - 141 326 IPR027417 -
Viun11g02887 919 FunFam Probable disease resistance protein At1g63360 418 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02887 Viun-Chr11 40738516 40741445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02887 184 504 WRKY Transcription Factor Family AT5G45050 24.074 1.16e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02887 - - vra:106779070 1290.4