Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02871 ATGGCAGACACTGTAGTTTCCTTCGTTTTGGATCACTTAGCGCAGCTTGTGGCACGCGAAGCTAACTTGCTGTATGGCGTGGAGGACAGGGTCCAGTCCCTCCAGTACGAACTTCAAATGATCAAACAACTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACAGTGTTGAACCAAATCAGAGATATGGCCCACTTAGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTGGGGAAGATGCTCCGTGGCTTTCACCAAGCAAGGTTGCTCCGCGACGTGGCCGAAAAAGTAGACAATATCAAAATCACTCTCAACGAAATACGCGATAACAAGAGCAAATATGAGGCTTTCAAAGAAACCAATAATCAATCTGCAGCAGAAGAAGAGGAAGAGGAGGAGAAGGAAAGAGCAAAAGCTCTGCAGAAGCTAAGAAGAAATGTGGAGGAAGATGACGTGGTTGGCTTTGTTCATGACTCCAACGATGTCATCAAGCGACTACTGGAAGGTGGTTCAAACCGTAAAGCTGTCTCTATCATTGGCATGGGGGGATTGGGGAAAACCACCCTTGCCCGAAAAGTCTATAATAGCAGCCAGGTGACGCAACACTTCATGTGTCGCGCGTGGGTTTATATGTCAAATGAGTGTAGAGTTAGGGAGCTTTTGCTTGGCCTTCTTAAGCATTTGATGCCAGATTTTGAACAGCAATGCAGAGGCAACAAGAAAGGTAAGAAAAGCGCTGGAAACATTAGCAACCTGAGTGAGGAGGAGCTGAAGATACTGGTGCGGAACTGTTTGGAGAGTGAAAGATATCTTGTGGTGGTAGATGATCTGTGGAAAAAGCAAGATTGGGACGAGGTGCAAGATGCTTTTCCGGACAACAACAGAGGCAGCAGAATCTTGATCACCAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGCCCATGATGTTCCTCACTATCTTCAATTCCTCAATGAAGAAGAAAGTTGGAAGTTGTTTAGTAGGAGAGTGTTTAGGGGTGAAGACTACCCTTCTGATTTGGAGTCTCTCGGAAAGCAGATGGTTCAAAGTTGTCGTGGCTTGCCTCTCTCCATCACTGTCTTAGCAGGGATGCTGGCCAACAAGGAAAAGTCATATAGAGAATGGTCTAAAGTGGTGGGTCATGTTAACTCGTATCTCACTCAAGATGAGACCCAAGTGAAAGATATAGTTCTCAAACTCAGCTATGATAACCTGCCAAGGAGATTAAAACCATGTTTTCTCTATCTTGGGATATTTCCTGAAGACTTTGAAATCCCTGTTGTGCCATTATTGCAAAAATGGGTTGCGGAAGGTTTTATACAAGATAAAGGAAATAGAGACCCTGATGACATTGCAGAAGATTACTTGTATGAGCTTATTGATCGTAGTTTGGTACAAGTAGCAATTGTGGATACTAATGGAAGTGTGAAGACGTGTCAGGTTCATGATCTTCTTCGGGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACAATAACATTCTAATCCCTACAAAACCACGCAGGCTGTCCATTCACAGTAGCATGGGTCACTACATTTCTTCAAACGGTAATGACCACTCTTGTATCCGTTCCCTGTTCTTCTTTGGCCCAGATTACCATGTTCACATGAAGGAGTGGAAATGGCTTTCAGAAGGCTTCAAATTGGTTCGGGTTTTAGAGATTGGACCAACCAGGTGGGGAAAAATCCCTTCAAATTTAGGGAACTTTATCCATTTAAGGTACTTAAGAATGAACTCATTCAATGTTAAATTTGTTCCAACTTCAATACTTACCCTTTGGAATCTACAAACCATAGACATAGGTCCTTGGAGGCGTAGTGTTCCAATTTCTTTCCCTGTCCAAATGTGGAAACTCAAACATTTAAGACATTTGAATACACCACAACCTATCGAGCTGCGAGGCAGTTATTCAGGATCAGACGAGAAGATGTGGAATCTTCAAACCATCTCTGCCATTCTACTCAATAGCCAAGCAACATCTCTGATAAAGAAGGGAACATTCCCCAATCTTAAAAGTCTAGGATTGAAAGTGGCTTATGGATACAAAGGTGAATTACCCAAATTGTTGCAGAGCCTACAACAATTAAGTTATTTGAATAAGTTGGTGATTGTTCTCCGAGATAGGCATGATACAGAAGTATTTGTCGATGAAAGTGTGGAAAGGAATAATGGTTGCAAGCCGCAAGAGTTGTTACGATGCCTAGGGCAATTCAATTGTCTAACTATCTTAAGCATCGAGAATTGTTTGGACCTTCTAACATGTGCGGTCACACTCCCTCCGAACGTTACAGAGTTAACATTGTCAGGGATTGACTACATTAGTGATCAAGGGATGAATGGTTTGGGAAATCACACTAAACTCAAAATTTTGACACTTTGGGGAATTTGGTCGTGTGATACCTTTAACCTTAATTGTGTCGGAGGTAGCTTCCCACAACTCGAAGTGTTTCAAATGGGTCATTTAGAAGTTGGAAATTGGAGATTAGGTAATGGTGCAATGCCGAAGCTCCAGAAAGTGGTCATCTTCAATTGTGATAGGTTAAATGATCTCCCAAATGAACTGTGGTCTTTGAGTGGCTTGAGAAAAGTGCAGGTAAGGAAACCTTCAGAACAAATGGCTTGCATGTTGCGGAATTTGGAAGTAAACAATGGGGTTCAACTCTTTATAAATGGCATCAATATCAACAATTTTTAG 2790 0.4233 MADTVVSFVLDHLAQLVAREANLLYGVEDRVQSLQYELQMIKQLLNTTKRKKGMEHTVLNQIRDMAHLAEDVIDTFVAKVSIYKRRTILGKMLRGFHQARLLRDVAEKVDNIKITLNEIRDNKSKYEAFKETNNQSAAEEEEEEEKERAKALQKLRRNVEEDDVVGFVHDSNDVIKRLLEGGSNRKAVSIIGMGGLGKTTLARKVYNSSQVTQHFMCRAWVYMSNECRVRELLLGLLKHLMPDFEQQCRGNKKGKKSAGNISNLSEEELKILVRNCLESERYLVVVDDLWKKQDWDEVQDAFPDNNRGSRILITSRLKEVALHAAHDVPHYLQFLNEEESWKLFSRRVFRGEDYPSDLESLGKQMVQSCRGLPLSITVLAGMLANKEKSYREWSKVVGHVNSYLTQDETQVKDIVLKLSYDNLPRRLKPCFLYLGIFPEDFEIPVVPLLQKWVAEGFIQDKGNRDPDDIAEDYLYELIDRSLVQVAIVDTNGSVKTCQVHDLLRDLCISESKEDKVFEVCTDNNILIPTKPRRLSIHSSMGHYISSNGNDHSCIRSLFFFGPDYHVHMKEWKWLSEGFKLVRVLEIGPTRWGKIPSNLGNFIHLRYLRMNSFNVKFVPTSILTLWNLQTIDIGPWRRSVPISFPVQMWKLKHLRHLNTPQPIELRGSYSGSDEKMWNLQTISAILLNSQATSLIKKGTFPNLKSLGLKVAYGYKGELPKLLQSLQQLSYLNKLVIVLRDRHDTEVFVDESVERNNGCKPQELLRCLGQFNCLTILSIENCLDLLTCAVTLPPNVTELTLSGIDYISDQGMNGLGNHTKLKILTLWGIWSCDTFNLNCVGGSFPQLEVFQMGHLEVGNWRLGNGAMPKLQKVVIFNCDRLNDLPNELWSLSGLRKVQVRKPSEQMACMLRNLEVNNGVQLFINGININNF 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02871 929 CDD RX-CC_like 2 121 IPR038005 -
Viun11g02871 929 FunFam Probable disease resistance protein At1g61300 146 329 - -
Viun11g02871 929 Gene3D Ribonuclease Inhibitor 546 916 IPR032675 -
Viun11g02871 929 Coils Coil 126 162 - -
Viun11g02871 929 Pfam NB-ARC domain 172 422 IPR002182 GO:0043531
Viun11g02871 929 SUPERFAMILY L domain-like 498 911 - -
Viun11g02871 929 Gene3D - 5 96 - -
Viun11g02871 929 Gene3D - 334 419 IPR042197 -
Viun11g02871 929 PANTHER DISEASE RESISTANCE PROTEIN RP 32 860 IPR044974 GO:0006952
Viun11g02871 929 FunFam Probable disease resistance protein At5g66910 334 421 - -
Viun11g02871 929 Gene3D - 147 328 IPR027417 -
Viun11g02871 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 434 IPR027417 -
Viun11g02871 929 Coils Coil 102 122 - -
Viun11g02871 929 PRINTS Disease resistance protein signature 369 383 - -
Viun11g02871 929 PRINTS Disease resistance protein signature 276 290 - -
Viun11g02871 929 PRINTS Disease resistance protein signature 187 202 - -
Viun11g02871 929 PRINTS Disease resistance protein signature 767 783 - -
Viun11g02871 929 FunFam Probable disease resistance protein At1g63360 420 509 - -
Viun11g02871 929 Gene3D - 420 510 IPR036388 -
Viun11g02871 929 Pfam Rx N-terminal domain 5 81 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02871 Viun-Chr11 40627241 40630291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02871 186 437 WRKY Transcription Factor Family AT5G45050 26.562 4.49e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02871 - - vra:106779070 1272.3