Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02870 ATGGCAGACAGTGTAGTTTCCTTTGTTTTAAATCACTTATCTCAGCTTGTGGCACGCGAAGCTAACTTGCTGTATGGCGTGGAGGACAGGGTTCAGTCCCTCCAGTACGAACTTCAAATGATCAAAGAGCTTCTCAGTAGCACAAAGAGCAAGAAGGGAACGGAACATACAGTGTTGAACCAAATCAGAGATGTGGCCCACGTAGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTGCCATTTACAAGAGAAGAACCATTCTCGGGAGGATGCTCCTTGGCTTTGGCCAAGCAAGGTTGCTTCGCGATGTAACAGAAAAAATAGACAAGATCAAAGCCACTCTCAACGAAATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATCAATCCGCAGCAGAAGAAGAGGAAGAGGAGAAAAGGGTGCAATCACTGCACAAACTAAGAAGAAATGTGGAGGAAGAAGATGTGGTTGGCTTTGTCGAGGACTCCAAGGATGTCATAAACCGACTCCTGGAAGGTAGTTTAAATCGTAAAGCTGTGTCTATCGTTGGCATGGGGGGATTGGGGAAGACCACCCTGGCCCGAAAGGTCTATAACAGCAGCCAGGTGAAGCAACACTTCATGTGTCACGCGTGGGTTTACGTGTCAAACGAGTGCAGACTTAGGGAGCTTTTGCTTGACCTTCTTAAGCATTTGATGCCAGATTTTGAACAGCAATGCAGAGGCAAAAAGAAAGGTAAGAAAAACACTCTAGACATTAATAGCTTGAGTGAGGAGGAGCTGAAGAAATTGGTGCGGAACTGCTTGGAGAGGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCAGGATTGGGACGAGGTGCAAGATGCTTTTCCCGAAAACAACAGAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGCCCATGATGTTCCTCACTATCTTCAATTCCTGAATGAAGAAGAAAGTTGGGAATTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATCTGGAGTCTTTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGCTTGCCTCTCTCCATCACTGTCTTAGCAGGGATGCTGGCCAACAAGGAAAAGTCATATAGAGAATGGTCTAAAGTGGTGGGTCATGTTAACTCGTATCTCACTCAAGATGAGACCCAAGTGAAGGATATAGTTCTCAATCTCAGTTACGATAACTTGCCAAGGAAATTAAAACCATGTTTTCTCTATTTTGGGATATATCCTGAAGACTCTGAAATCCTTGTTAGACCATTATTGCAAAAATGGGTTGCTGAGGGTTTTATACAAAATACAGGGAGCAGAGACCCAAATGACGTTGCAGAAGACTACTTGTATGAGCTCATTGATCGTAGTTTGGCCCAAGCAGCAAGAGTGGATACTAATGGAGATGTGATGGTGATTCGGGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACAATAACATTCTAATCCCTACAAAACCTCGCAGACTATCTGTTCACAGTAAGATGGATCACTACATTTCTTCAAGCAACAATGATCATTCATGTATTCGTTCCTTGTTTTTCTTTGGGCCACTTTATGATGTTCGCAATCGGGACTGGAAATGGCTTTTTGAAAGATTGAAATTGGTTCGTGTGTTGGATTTTGGACTAATCCCCTCTAGTAAGATCCCTTCCGATATAGGGAACTTTATCCATTTAAGGTACCTCAAAATACAATCAGACTATGTTACATTTGTTCCAGATTCGATACTTAACCTTTGGAATTTAGAAACCGTAGAGCTAGGTCCTTCGAGGTTTAACATTTTTCCAATTTCTTTCCCTGCCCAAATATGGAAACTGAAACATTTAAGGCATTTGAATATATCATGGGCTATCCGGCTGCGAGGCAGTTGTTTAGGATCAAATGAGAAGATGTGGAATGTTCAAACCGTGTCTACCCTGATGCTCAATAGCCAAGCAACATCTCTGATAAAAAAGGGAACATTCCCCAATGTTAAGAAGCTACGGTTGAGAGTGACTTCTGAATGCGAAGATGAATTACCCAAATTGTTGCAGAGCTTACAAGAATTAAGTTATTTGAACATGTTAGTGATTGTCCTCCGAGATAGAGATGATGCAGGTGTAGAGCATTCGACCGATGAAAGTGTGAAAAGGAACAGTGGTTTCAAGCCACAAGAATTGTTACGAAACCTAGGACAATTCAATTGTCTAACTATCTTAACCATTGAGAATGCTTTTGACCTTCTAACCTGTGCGTTCGCATTCCCTCCAAACGTTACAGAGTTAACGTTGTTTAGAATTAAGTGCATAAGTGATGAGGGGATGAATGGTTTGGGAAATCACACCAAACTCAAAATTTTGAGACTTTTGGGTGATTGA 2487 0.4222 MADSVVSFVLNHLSQLVAREANLLYGVEDRVQSLQYELQMIKELLSSTKSKKGTEHTVLNQIRDVAHVAEDVIDTFVAKVAIYKRRTILGRMLLGFGQARLLRDVTEKIDKIKATLNEIRDNKDKYDAFKETNNQSAAEEEEEEKRVQSLHKLRRNVEEEDVVGFVEDSKDVINRLLEGSLNRKAVSIVGMGGLGKTTLARKVYNSSQVKQHFMCHAWVYVSNECRLRELLLDLLKHLMPDFEQQCRGKKKGKKNTLDINSLSEEELKKLVRNCLERKRYLVVVDDLWKRQDWDEVQDAFPENNRGSRILITSRLKEVALHAAHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLESLGKQMVQSCRGLPLSITVLAGMLANKEKSYREWSKVVGHVNSYLTQDETQVKDIVLNLSYDNLPRKLKPCFLYFGIYPEDSEILVRPLLQKWVAEGFIQNTGSRDPNDVAEDYLYELIDRSLAQAARVDTNGDVMVIRVHDLLRDLCISESKEDKVFEVCTDNNILIPTKPRRLSVHSKMDHYISSSNNDHSCIRSLFFFGPLYDVRNRDWKWLFERLKLVRVLDFGLIPSSKIPSDIGNFIHLRYLKIQSDYVTFVPDSILNLWNLETVELGPSRFNIFPISFPAQIWKLKHLRHLNISWAIRLRGSCLGSNEKMWNVQTVSTLMLNSQATSLIKKGTFPNVKKLRLRVTSECEDELPKLLQSLQELSYLNMLVIVLRDRDDAGVEHSTDESVKRNSGFKPQELLRNLGQFNCLTILTIENAFDLLTCAFAFPPNVTELTLFRIKCISDEGMNGLGNHTKLKILRLLGD 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02870 828 CDD RX-CC_like 2 121 IPR038005 -
Viun11g02870 828 FunFam Probable disease resistance protein At1g63360 418 507 - -
Viun11g02870 828 Gene3D - 5 93 - -
Viun11g02870 828 Gene3D - 418 508 IPR036388 -
Viun11g02870 828 Coils Coil 140 160 - -
Viun11g02870 828 FunFam Probable disease resistance protein At5g66910 332 419 - -
Viun11g02870 828 SUPERFAMILY L domain-like 496 825 - -
Viun11g02870 828 Pfam NB-ARC domain 170 419 IPR002182 GO:0043531
Viun11g02870 828 Gene3D Ribonuclease Inhibitor 570 827 IPR032675 -
Viun11g02870 828 Gene3D - 142 326 IPR027417 -
Viun11g02870 828 Gene3D - 332 417 IPR042197 -
Viun11g02870 828 Coils Coil 102 122 - -
Viun11g02870 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 432 IPR027417 -
Viun11g02870 828 PRINTS Disease resistance protein signature 367 381 - -
Viun11g02870 828 PRINTS Disease resistance protein signature 185 200 - -
Viun11g02870 828 PRINTS Disease resistance protein signature 274 288 - -
Viun11g02870 828 PANTHER DISEASE RESISTANCE PROTEIN RP 33 824 IPR044974 GO:0006952
Viun11g02870 828 FunFam Probable disease resistance protein At1g61300 144 327 - -
Viun11g02870 828 Pfam Rx N-terminal domain 5 81 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02870 Viun-Chr11 40621003 40623959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02870 181 386 WRKY Transcription Factor Family AT5G45050 26.699 1.95e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02870 - - vra:106779070 1143.26