Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02868 ATGGCAGAGAGTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAACTTGCGGCACGCGAAGCTAACTTGCTGTGTGGCGTGGAAGACAGGATTCAATCCCTCCAGCACGAGCTGCAAATGATCAATGAGCTCCTCAATACCACAAAGAGCAAGAAGGGAATGGAACATACAGTGTTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGAAGAACCATTCTCGGGAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCACCACGTAGCCGAAAAAATAGACAAGATCAAAACCACTCTCAATGAAATACGCGAGAACAAGAACAAATATGATGCTTTCAAAGAAACCAATAGTCAATCCGCAGCAGAAGAAGAGGAAGAGGAGAAAAGGGCGAAATTACTGCACAAGCTAAGAAGAAATGTGGAGGAAGAAGGTGTAGTTGGCTTTGTCCATGACTCCAAGGATGTCATCAACCGACTCCTGGAAGGTGGTTCAAATCGTAAAGCTGTGTCTATCGTTGGCATGGGGGGATTGGGGAAGACCACTCTTGCCCGAAAGGTCTATAACAGCACCCAGGTGAAGCAACACTTTATGTGTCAAGCGTGGGTTTATGTGTCAAACGAGTGCAGAGTTAGGGAGCTTTTGTTTGGCCTTCTTAAGCATTTGATTCCAAATTTTGAGCAGCAATGGAGAGGCAACAAGGAGGGTAAGAAAATCGCTCGAGACATTAACAACCTGAGTGAGGAAGAGCTGAAGAAACTGGTGCAGAACTGCTTGGAGAGTGAAAGGTATCTTGTGGTGGTAGATGATCTCTGGAAAACACAAGATTGGGAGGAGGTGCAAGATGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGATCACAAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGCCCATGATGTTCCTCACTATCTTCAATTTCTCAGTGAAGAAGAAAGTTGGGAGTTGTTTTGCAAGAAAGTGTTTAGAGGTGAAGACTGTCCTTTTGATTTGGAGACTCTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGGTTGCCGCTCTCCATCATTGTTTTAGCAGGGCTACTGGGCAACAAGGAAAAGTCTCATCGAGAATGGTCTAAAGTGGTGGGTCATGTCAATTGGTATCTTACTCAAGATGAGACCCAAGTGAAAGACACAGTTCTCAAACTTAGCTACGACAACTTGCCAAAAAGATTAAAACCATGTTTTCTTTATCTTGGGATATTTCCTGGAGACATAGAAATCCCTGTTAGGCCATTATTGCAAAAATGGATTGCAGAGGGTTTTATACAAAATACAGGGAATAGAGACCCAGACGATGTTGCAGAAGACTACTTGTACGAGCTCATCGATCGTAGTTTGGTCCAAATAGGAAGAGTGGAGAGTAATGGAAGTTTGGAGACGTGTCAGATTCATGAACTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAAGACAAAGTTTTTGATGTTTGCATAGACAATAACATTCTAATCCCGACCAAACCTCGCAGACTGTCCATTCACAGTGACATGGGTCACTACATCTCTTCAAGTAACAACGATCATTCACATATACGTTCCTTGTTCTTTTTTGGCCAAGATTACTATGTTCGTGAAAGGGACTGGAAATGGCTTTTGGAATGCTTCAAATTGGTTCGAGTGTTAGAGCTTAGACCGACCAGCTGCAGAAAGATCCCTTCTAATTTAGGGAACTTTATCCACTTAAGAAACTCAAACATTTAA 1824 0.4348 MAESVVSFVLDHLAQLAAREANLLCGVEDRIQSLQHELQMINELLNTTKSKKGMEHTVLNQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQARLLHHVAEKIDKIKTTLNEIRENKNKYDAFKETNSQSAAEEEEEEKRAKLLHKLRRNVEEEGVVGFVHDSKDVINRLLEGGSNRKAVSIVGMGGLGKTTLARKVYNSTQVKQHFMCQAWVYVSNECRVRELLFGLLKHLIPNFEQQWRGNKEGKKIARDINNLSEEELKKLVQNCLESERYLVVVDDLWKTQDWEEVQDAFPDNNRGSRILITSRLKEVALHAAHDVPHYLQFLSEEESWELFCKKVFRGEDCPFDLETLGKQMVQSCRGLPLSIIVLAGLLGNKEKSHREWSKVVGHVNWYLTQDETQVKDTVLKLSYDNLPKRLKPCFLYLGIFPGDIEIPVRPLLQKWIAEGFIQNTGNRDPDDVAEDYLYELIDRSLVQIGRVESNGSLETCQIHELLRDLCISESKEDKVFDVCIDNNILIPTKPRRLSIHSDMGHYISSSNNDHSHIRSLFFFGQDYYVRERDWKWLLECFKLVRVLELRPTSCRKIPSNLGNFIHLRNSNI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02868 607 CDD RX-CC_like 2 121 IPR038005 -
Viun11g02868 607 PRINTS Disease resistance protein signature 274 288 - -
Viun11g02868 607 PRINTS Disease resistance protein signature 367 381 - -
Viun11g02868 607 PRINTS Disease resistance protein signature 185 200 - -
Viun11g02868 607 Pfam NB-ARC domain 170 420 IPR002182 GO:0043531
Viun11g02868 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 432 IPR027417 -
Viun11g02868 607 FunFam Probable disease resistance protein At1g63360 418 507 - -
Viun11g02868 607 Coils Coil 140 160 - -
Viun11g02868 607 PANTHER DISEASE RESISTANCE PROTEIN RP 31 603 IPR044974 GO:0006952
Viun11g02868 607 Gene3D - 418 509 IPR036388 -
Viun11g02868 607 FunFam Probable disease resistance protein At5g66910 332 418 - -
Viun11g02868 607 Gene3D - 5 96 - -
Viun11g02868 607 FunFam Probable disease resistance protein At1g61300 144 327 - -
Viun11g02868 607 Coils Coil 31 51 - -
Viun11g02868 607 Pfam Rx N-terminal domain 5 81 IPR041118 -
Viun11g02868 607 Gene3D - 156 326 IPR027417 -
Viun11g02868 607 Coils Coil 102 122 - -
Viun11g02868 607 Gene3D - 332 417 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02868 Viun-Chr11 40606524 40609365 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02868 184 435 WRKY Transcription Factor Family AT5G45050 25.882 9.84e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02868 - - vun:114168352 1003.05