Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02858 ATGTGTGATGAAGAAGAGGGTCTAAAAATCATCGATCATCTTAACGAGTGTGCAACTTTTACTGAATCAGGAAACTTCATTGATGCAGACACTGCACTGTACCATCTCTCTCACCTTGCTTCCCCACATGGTGATTCAATGCAACGCGTTGCCACTTATTTCACCGAGGCACTAGCACATTGCCAATTGGCCAAAAACATGCGCGGTGTGCCCAAAGTTCTTCGCTTGGTGAGAGCATTATCAACTCCTGAACAACAACTTGTGAAGAAACTATTCTTTGATTTCTACCCCTTCTTAAAAATCTCGCACACGATCACAAACCAGACCATTATAGAAGCCATGCAAGGGGAAACAGCGATCAACGTACTTGATCTAAGTCCATCATCCAACGCAGAACAGTGGATTAGCCTCATGCAGGGTTTGAGAGAGCGTTTAACAAACACACCATATCTGAAGATTACTCTCACAGCCATACACGAGAAAAGGGAAGTGTTGGAACAAATGGAGTTGCATCTGAAAGTTGAAGCTGAAAGGTTGAACTTTCATTTCAAATTCAACCCTGTTGTAAGCACTTTGGAGAGTCTTGACCCTGAGACATTGCCCATCAAGAAAGGTGAGCCTCTTGCAATAAGCTGTGTGCTTCAGCTTCACTCTCTTCTCGCTGCAAACGATGATGAGATGGTGAAAATTAGGGTTCAGAGGGATTTTGCTGAGATGCTTATAAACCAGAAGAACAAGAAGGTGAATCGAAGTCCTGATTCAGCACTGTCACCTTTTTCGCCATGTCCATCACAGAAAATGGAGAGTTTTCTGAATGGTCTGTGGAGGCTCCAACCCAGAGTGATGGTGATCACCGAGCAAGAATCGAATGTTAATGGAGCTAGTTTGAGAGAGAGGGTGTGCAAAGCTTTGAGCTTTTACGGCACACTGTTTGATTGCTTGGATGCTTCAGCTTCAAGAACATTACTGGGGAGAAGCTTGTTGGAGAAGATGCTTCTTGGTGAAGAGATCAAGAACATTGTTGCATGTGAAGGGGTTGAGAGAAAGGAGAGGCATGAGAAACTAGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAACTGCACCTGTTAGTTCCAATGGAATTTGGCTTGCAACAAAGTTGTTGCAGAGCTATGTGCCAGGTTACCACATCCATCAGAAGAACAAGTTCTTGTTTATCTGTTGGGAGAAAATTCCTCTCTTTTCGATTTCTGCATGGAAGTTTTAG 1254 0.4354 MCDEEEGLKIIDHLNECATFTESGNFIDADTALYHLSHLASPHGDSMQRVATYFTEALAHCQLAKNMRGVPKVLRLVRALSTPEQQLVKKLFFDFYPFLKISHTITNQTIIEAMQGETAINVLDLSPSSNAEQWISLMQGLRERLTNTPYLKITLTAIHEKREVLEQMELHLKVEAERLNFHFKFNPVVSTLESLDPETLPIKKGEPLAISCVLQLHSLLAANDDEMVKIRVQRDFAEMLINQKNKKVNRSPDSALSPFSPCPSQKMESFLNGLWRLQPRVMVITEQESNVNGASLRERVCKALSFYGTLFDCLDASASRTLLGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGTAPVSSNGIWLATKLLQSYVPGYHIHQKNKFLFICWEKIPLFSISAWKF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02858 417 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 411 IPR005202 -
Viun11g02858 417 ProSiteProfiles GRAS family profile. 1 416 IPR005202 -
Viun11g02858 417 Pfam GRAS domain family 11 416 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02858 Viun-Chr11 40551544 40552797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02858 4 416 GRAS Transcription Factor Family AT1G50420 44.266 8.73e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g02858 GRAS 2.9e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02858 - - vra:106778126 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02858 11 40551544 40552797 Viun11g02858 11 40551544 40552797 ECH