Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02817 ATGTCAAGAATCCCGCAGGTTGTAACATGCAAAGCTGCAATATGCTGGGGATTAGGTCAACCTGTTACAGTAGAAGAGATACAGGTTGATCCACCAAAAGCAACAGAAGTTCGAGTTAAGATGCTCTGTTCCAGTTTATGCCACACAGACATAACAAGCCTTCAAGGATTCCCACATATGAAATTTCCTCGAGCACTTGGGCACGAAGGAGTTGGTGTTGTGGAGAGTGTTGGTGACCAAGTGACAACCCTTAAAGAGGGCGATGTGGTGATCCCTACATACATAGGCGAGTGTGAAACATGTGAGAATTGTGTTTCCGGAAAAACCAATCTATGTCTGACAAACCCTGTGAGATTAACTGGTTTACTACCAGATGAGACTTCAAGAATGTCCATCAGAGGACAGAGGCTGTACCATGTTCTAAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGTCAATTACGTTCTCAAAGTTGATCCAACCATTGATCCAACCCATGCCAGTTTCATCTCGTGTGGGTTTTCAACTGGGTATGGAGCTGCTTGGAAAGAAGCCAAGGTTGAAAGTGGGTCCAGTGTAGCTGTTTTGGGTCTTGGTGCTGTTGGTTTAGGGGCTATAAGCGGAGCCAAAGCTATGGGAGCAGCTAAGATAATTGGAATTGACAAAAACGAGAAGAAGAGGGAAAAAGGAGAGGCTTTTGGAATGAACCACTTCATAAATCCAAGTGATTCTGCTAAATCTGTTTCAGAATTGGTAAAGGAAGCAACTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACCGGAATTCCTCCTATGCTTACCGAATCATTGGAAGCCACAAAAATGGGAACGGGTAAAACAGTAGTAGTTGGAATACCAGCAGAACCTACTGTCCCATTGGGTCTCATAGCCATTCTTTTGGGTAGAACTTTGAAAGGTTCAGTTTTTGGGGGCTTAAAAGTTAGGTCTGATCTCTCCATAGTAGTTGACAAAAGCCAGAAAAAGGAATTCCCTCTTGAAGAACTATGGAGCCATGAGGTCCCATTAGAAGATATTAAGAATGCATTCGTGATATTGAAGGAGCCCAGTTGTCTGAAAATTGTCATCAAGATGTCACATTTATGA 1134 0.4312 MSRIPQVVTCKAAICWGLGQPVTVEEIQVDPPKATEVRVKMLCSSLCHTDITSLQGFPHMKFPRALGHEGVGVVESVGDQVTTLKEGDVVIPTYIGECETCENCVSGKTNLCLTNPVRLTGLLPDETSRMSIRGQRLYHVLSCATWSEYMVSDVNYVLKVDPTIDPTHASFISCGFSTGYGAAWKEAKVESGSSVAVLGLGAVGLGAISGAKAMGAAKIIGIDKNEKKREKGEAFGMNHFINPSDSAKSVSELVKEATGGMGVDYSFECTGIPPMLTESLEATKMGTGKTVVVGIPAEPTVPLGLIAILLGRTLKGSVFGGLKVRSDLSIVVDKSQKKEFPLEELWSHEVPLEDIKNAFVILKEPSCLKIVIKMSHL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02817 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Viun11g02817 377 Gene3D - 14 369 - -
Viun11g02817 377 CDD liver_alcohol_DH_like 8 373 - -
Viun11g02817 377 Pfam Zinc-binding dehydrogenase 202 324 IPR013149 -
Viun11g02817 377 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Viun11g02817 377 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Viun11g02817 377 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Viun11g02817 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 335 IPR036291 -
Viun11g02817 377 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Viun11g02817 377 SUPERFAMILY GroES-like 5 190 IPR011032 -
Viun11g02817 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Viun11g02817 377 Gene3D - 179 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02817 Viun-Chr11 40348780 40351126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02817 35 323 Monolignol Biosynthesis Gene Families AT2G21730 29.831 1.14e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02817 K00121 - gmx:100798341 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02817 11 40348780 40351126 Viun11g02817 11 40348780 40351126 ECH