Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02807 ATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGCAGATATTTACATGTCAACAACCAACAGAGAAAACCTAACGTTCAAGGGTTTGGAGGACAAAACGGTTCTCACCAACAGCAAAGTACAAATCCCTTTGGATTTGGGTCTGGTTCTGGCTCACAACAACAACAGAAGTCTAACCCTTTTGGTTTTGGCACTCAGAACAATTCCCAGTTAAATGGGGGGCCTCGTTCTGAGTATAAACCGAACCAATACAAGCCTTTTGAAAATAAATGGAATCGGCAGTCGTCCAAACCCCAGAATGGTGGAAAATCTGATAACAACCCCCAACCAGTCGATCATAAATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAGAAACCAATTTGGATACTTACATGCTACGGTCATTTCAGAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATATACTGAAATCCAAGATGCTTGAGTTTCAGAAACTGCTTTCTGAACCTTACCAAAAACCAATAAATTCTTCGCTCGACATTCAAAGACCCCAATCCATGGGAGCCAATGCAAATCTGTTTTCAGGAACATCTCAAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCAATGAATATGGGTTTTGGAAGGCCATCTGCACCACCAACAAACACTCTGGCACAGCCTAGTTTTTTTGGAATTGGAGGAAACTCTTTGGCATCCAATACAGGAAACCTAACCACCAGTGGCTCCTTCGGTATTCAAAGCAACCCCCATTCTACACCAGTGGATATGACAATGTTTCCGGGTTCAACTCAGCAAACACCAGCCACATTCAATAACTCTGGTCCCAATACAATGTTTCAAACAACATCAGATGTCCTGTTGTCAAAGAAGTTACAATCGGAGAATGTGTCAGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCAGGAGAGATTCCAGAAGAAGCTCCTCCTGATTCATTGGTACGGTAG 1125 0.4284 MRDICRNFQRGSCQYGERCRYLHVNNQQRKPNVQGFGGQNGSHQQQSTNPFGFGSGSGSQQQQKSNPFGFGTQNNSQLNGGPRSEYKPNQYKPFENKWNRQSSKPQNGGKSDNNPQPVDHKCTDPENCKRQIAEDFEKEKPIWILTCYGHFRGAPCDIVGDISFEELRASAYEDAKRGMSLQSIVEKERNILKSKMLEFQKLLSEPYQKPINSSLDIQRPQSMGANANLFSGTSQSNGPLSVSSFSQLGTSMNMGFGRPSAPPTNTLAQPSFFGIGGNSLASNTGNLTTSGSFGIQSNPHSTPVDMTMFPGSTQQTPATFNNSGPNTMFQTTSDVLLSKKLQSENVSGDVSIWLKEKWNPGEIPEEAPPDSLVR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02807 374 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Viun11g02807 374 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Viun11g02807 374 MobiDBLite consensus disorder prediction 30 84 - -
Viun11g02807 374 MobiDBLite consensus disorder prediction 94 116 - -
Viun11g02807 374 SUPERFAMILY CCCH zinc finger 3 29 IPR036855 GO:0046872
Viun11g02807 374 Gene3D - 1 64 - -
Viun11g02807 374 MobiDBLite consensus disorder prediction 30 125 - -
Viun11g02807 374 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 4 213 - -
Viun11g02807 374 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g02807 zf-CCCH_4 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02807 K14321 - gmx:100814339 584.719