Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02797 ATGATGGGAAGAGCACCATGCAGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTTCATTCAGAAACATGGGCATGGAAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGTTGCAGGCTAAGATGGACAAACTACTTGAGACCTGATATCAAAAGAGGAAAGTTCTCTGAGGAAGAACAGCAACTCATCATCAATTTGCATGCAGTTCTTGGCAACAAGTGGTCAGCTATAGCAGGTCATTTACCAGGTAGGACTGATAATGAAATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAGCTTCTGCAAATGGGGTTGGATCCAGTCACTCATCAACCAAGATCAGATCATCTTAATCTTCTATCAAGTCTTCAACAGTTGCTGACTGCTACAAACATTTTCACAAACACCTTGGAGACTAATGCTCTAAGGCTGCAATCAGATGCCACAGAACTAGCCAAACTCCAATTGCTGCATAACATGCTTCAAGTCCTTGCTCCTGCTTCAAACTTGGACCTTCTCAATCCTTTTGGATCATCCCTGCCAGATGAAGTTTTGGGATTGGATCAGTGCAGCAAGCTCCAAAACATTTACAATAGTTGTTCAACTGGGTTTCTTTCTCAGAATCAGTTTCAAAACTTTGAAGGTCTTCCTCAGCAGCAATCTCTACCAACTGAGTATAATAACCCGATGAATAATGGAGGAAGCAACAGAAGAAGTTGCATGAAATCTGAAAAGGTTGATGAACAACTTTGTTCGTTTTCAACACCTTTAGATTCTCTTCCAAATCTGGTTTCAGCCTCACCCGAATGTTCAACTGTTAAACAAATGGAGAACATGGTAACCCCAAATGAATTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATCAATGAGGAAGTAACTGATGCTTTTTGGAAAGATCTCATAGACCAAGATTGCAACCAGTAG 1017 0.411 MMGRAPCSDESGLKKGPWTPEEDNILVDFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEQQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHQPRSDHLNLLSSLQQLLTATNIFTNTLETNALRLQSDATELAKLQLLHNMLQVLAPASNLDLLNPFGSSLPDEVLGLDQCSKLQNIYNSCSTGFLSQNQFQNFEGLPQQQSLPTEYNNPMNNGGSNRRSCMKSEKVDEQLCSFSTPLDSLPNLVSASPECSTVKQMENMVTPNEFSDPSSTSTTFEMWGDFINEEVTDAFWKDLIDQDCNQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02797 338 FunFam Transcription factor MYB39 70 131 - -
Viun11g02797 338 Gene3D - 70 117 - -
Viun11g02797 338 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun11g02797 338 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Viun11g02797 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 282 - -
Viun11g02797 338 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Viun11g02797 338 FunFam MYB-related transcription factor 14 67 - -
Viun11g02797 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun11g02797 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Viun11g02797 338 Gene3D - 12 68 - -
Viun11g02797 338 SMART sant 67 115 IPR001005 -
Viun11g02797 338 SMART sant 14 64 IPR001005 -
Viun11g02797 338 CDD SANT 70 113 IPR001005 -
Viun11g02797 338 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Viun11g02797 338 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Viun11g02797 338 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02797 Viun-Chr11 40278694 40280233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02797 2 333 MYB Transcription Factor Family AT5G16770 53.258 1.76e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g02797 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02797 K09422 - gmx:547488 492.656