Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02780 ATGTCAGAAGGAATTACTTTGGATGAAACTACCCACATTTTCAGATCAAAGTTACCAGACATTCCACTCCCCAACAACCTCCTCCTCCACAAATACTGCTTCCTTAAACTTCCCGAAGTCGCCAACCGCACATGCCTCATCGCCGCCGCCAGAACCTACACCTACGCCGACACTCACCGCGCCTCGCGGAAGGTGGCCGCCGGCATGTCGAAGCTGGGCATCCAGAAGGGCGACACCGTCATGATTCTCCTCCCCAACTCCCCGGAGTTCGTCTTCACCTTCATGGCGGTCTCCATGCTCGGCGCCGTCGCCACCACCGCCAACCCCTCCTACACCGCCGCCGAACTCGCCAAGCAACTGGCCGTCTCCAACGCCAAGCTCGTCGTCACGCTCTCCGCCCACGTCCACAAGCTCAACAACCAGCAAGCGCAGCACCGCTTCTTCAAGGTGGTAACCGTCGACGACCCACCGGAGAATTGCTCGGCTTTCCCGGAGGGCGACGAGAGCGAGGTTCCGGAGGTTGAGATATCAGTGGAGGACGCGGTGGCGCTGCCGTTTTCGTCGGGGACGACGGGGCTGGCGAAGGGGGTGATTCTGACGCACAAGAGTTTGGTAACCAGCGTGGCGCAACTGATAGAGGGAGAGAACCCGCACATGTACCTGAAAGAAGAGGACGTTGTGCTGTGCGTGCTTCCTCTGTTTCACGTGTTCGCCATGCACATCGTGATGATGTGTGGGATGAGAACGGGGAGCGCTATTTTGCTGATCGAGAAGTTTGAGATGAGGACGCTGCTGGAGGCGATTGAGAAACATAGGGTGACGGTGGCGATACTGGTGCCGCCGCTGGTGGTGGCGCTTACGAAGAACACGGCGGTGGAGAAGTACGATTTGAGTTCGATACGGTTGGTTATGTCGGGGGCTGCGCCGCTGGGGCTACAGGCGGAAGAGGCTCTGCGGAAGAGGTTGCCCAACGCCATTCTAGGACAAGGATATGGAATGACAGAGAGTGGACCAGTGTTGACCATGTCTTTGGGTTTTGCAAAGTTTCCATTTCCAACCAAGTGTGGTTCGTGCGGAACTGTGGTGAGAAACGCTGAGATGAAGGTGATTCACCCTCTAACTTCCTTGTCTCTTCCCCGTAACGAGCATGGCGAGATTTGCGTGCGTGGCTCTCAGATCATGAAAGGGTATCTGAATGACGAGAAGGCCACTGCAGAAACCATTGATGCAGATGGTTGGCTTCATACAGGTGACATTGGCTACGTTGATGATGATGATGAGGTTTTCCTCGTTGATAGGGCCAAGGAACTCATCAAATTCAAAGCCTTCCAGGTGCCGCCGGCGGAACTTGAAGACCTCCTCAGGAGCCACCCTTCGATTGCAGATGCAGCTGTTGTTCCGCAAAAAGACGATGCTGCCGGCGAAGTTCCGGTGGCTTTCGTTGTCGGCTTTGATCTTACAGAAGATGCTGTAAAGGATTTTGTAGCTAAACAGGTAGTGTTTTACAAGAGAATACACAAAGTGTATTTTGTTGATGCAATTCCAAAGTCTCAGACGGGAAAGATATTAAGAAAAGAACTCAGAGCAAAGCTGGCGAAGATTATTGAGAGGAACTAA 1617 0.5393 MSEGITLDETTHIFRSKLPDIPLPNNLLLHKYCFLKLPEVANRTCLIAAARTYTYADTHRASRKVAAGMSKLGIQKGDTVMILLPNSPEFVFTFMAVSMLGAVATTANPSYTAAELAKQLAVSNAKLVVTLSAHVHKLNNQQAQHRFFKVVTVDDPPENCSAFPEGDESEVPEVEISVEDAVALPFSSGTTGLAKGVILTHKSLVTSVAQLIEGENPHMYLKEEDVVLCVLPLFHVFAMHIVMMCGMRTGSAILLIEKFEMRTLLEAIEKHRVTVAILVPPLVVALTKNTAVEKYDLSSIRLVMSGAAPLGLQAEEALRKRLPNAILGQGYGMTESGPVLTMSLGFAKFPFPTKCGSCGTVVRNAEMKVIHPLTSLSLPRNEHGEICVRGSQIMKGYLNDEKATAETIDADGWLHTGDIGYVDDDDEVFLVDRAKELIKFKAFQVPPAELEDLLRSHPSIADAAVVPQKDDAAGEVPVAFVVGFDLTEDAVKDFVAKQVVFYKRIHKVYFVDAIPKSQTGKILRKELRAKLAKIIERN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02780 538 CDD 4CL 23 527 - -
Viun11g02780 538 Pfam AMP-binding enzyme C-terminal domain 449 521 IPR025110 -
Viun11g02780 538 Gene3D - 434 535 IPR045851 -
Viun11g02780 538 FunFam Long-chain-fatty-acid--CoA ligase FadD 15 435 - -
Viun11g02780 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 529 - -
Viun11g02780 538 Pfam AMP-binding enzyme 42 440 IPR000873 -
Viun11g02780 538 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Viun11g02780 538 Gene3D - 5 433 IPR042099 -
Viun11g02780 538 SUPERFAMILY Acetyl-CoA synthetase-like 11 535 - -
Viun11g02780 538 FunFam 4-coumarate--CoA ligase 2 436 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02780 Viun-Chr11 40195036 40197430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02780 13 466 Monolignol Biosynthesis Gene Families AT3G21240 60.087 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02780 K01904 - gmx:100790396 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02780 11 40195036 40197430 Viun11g02780 11 40195036 40197430 ECH