Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02776 ATGGCAGATGAAGACGACGACGAGGTGCTCGGTTGCGCCACCGCCACCACCACCACCGCTTCTGGCCAATCCGCCTCCACCAACAGTTTGCCACCTCCCGCCGACAACACACTCCTCAAATTGAACCATCTCGACTTACACGCTGATGATGCTGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAGAAGAGAGGCCAACGAGCAGTTGGACCTGATAAGAGTGGGAGAGGTCTCCGACAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGTAGAACAACTTACAATGAGGTTGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAATCAATAGTGAATTAACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGAGTCTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCTCGTACTAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGCGCTAAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTGTATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACACCTTTTGAGTTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGCAAGATAATATGACGCACAATTTTACCGCTGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAACCACAGACTCCTTCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACCTCACCTCCTCTCCCTGGCATATTAAAGGCAAGGGTTAAGCAAGAGCATTGA 978 0.4479 MADEDDDEVLGCATATTTTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPINSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKTERLALRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQQDNMTHNFTAGGEGSSMSGLCQPQTPSTNLKVSNRPPTSPPLPGILKARVKQEH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02776 325 Pfam Transcription factor DP 164 277 IPR014889 -
Viun11g02776 325 SUPERFAMILY E2F-DP heterodimerization region 163 277 IPR037241 -
Viun11g02776 325 MobiDBLite consensus disorder prediction 12 35 - -
Viun11g02776 325 Pfam E2F/DP family winged-helix DNA-binding domain 76 156 IPR003316 GO:0005667|GO:0006355
Viun11g02776 325 Gene3D - 69 161 IPR036388 -
Viun11g02776 325 PANTHER TRANSCRIPTION FACTOR DP 21 278 IPR015648 GO:0005667|GO:0051726
Viun11g02776 325 CDD DP_DD 161 264 IPR014889 -
Viun11g02776 325 PIRSF Txn_factor_DP 7 325 IPR015648 GO:0005667|GO:0051726
Viun11g02776 325 MobiDBLite consensus disorder prediction 275 325 - -
Viun11g02776 325 MobiDBLite consensus disorder prediction 1 36 - -
Viun11g02776 325 SMART DP_2 163 323 IPR014889 -
Viun11g02776 325 FunFam Transcription factor-like protein DPB 162 286 - -
Viun11g02776 325 FunFam Transcription factor-like protein DPB 68 161 - -
Viun11g02776 325 SMART E2F_TDP_2 73 156 IPR003316 GO:0005667|GO:0006355
Viun11g02776 325 MobiDBLite consensus disorder prediction 53 77 - -
Viun11g02776 325 MobiDBLite consensus disorder prediction 275 306 - -
Viun11g02776 325 Coils Coil 172 206 - -
Viun11g02776 325 Gene3D Transcription factor DP 162 282 IPR038168 -
Viun11g02776 325 SUPERFAMILY "Winged helix" DNA-binding domain 76 157 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02776 Viun-Chr11 40184334 40187671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02776 74 274 E2F-DP Transcription Factor Family AT5G02470 54.455 2.08e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun11g02776 DP 5.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02776 K04683 - gmx:100798342 567.385