Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02775 ATGGCAGATGAAGACGACGACGAGGTGCTCGGTTGCGCCACCGCCACCACCACCACCGCTTCTGGCCAATCCGCCTCCACCAACAGTTTGCCACCTCCCGCCGACAACACACTCCTCAAATTGAACCATCTCGACTTACACGCTGATGATGCTGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAGAAGAGAGGCCAACGAGCAGTTGGACCTGATAAGAGTGGGAGAGGTCTCCGACAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGTAGAACAACTTACAATGAGGTTGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAATCAATAGTGAATTAACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGAGTCTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCTCGTACTAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGCGCTAAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTGTATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACACCTTTTGAGTTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGCAAGATAATATGACGCACAATTTTACCGCTGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAACCACAGACTCCTTCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACCTCACCTCCTCTCCCTGGCATATTAAAGAGAAATTGGCTTCAGTCGGTAGACCGTCATAATAGTTATTCAGCAGTACAGCCAAATCATTCTGTAGGTTAG 1026 0.4444 MADEDDDEVLGCATATTTTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPINSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKTERLALRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQQDNMTHNFTAGGEGSSMSGLCQPQTPSTNLKVSNRPPTSPPLPGILKRNWLQSVDRHNSYSAVQPNHSVG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02775 341 Pfam E2F/DP family winged-helix DNA-binding domain 76 156 IPR003316 GO:0005667|GO:0006355
Viun11g02775 341 SUPERFAMILY E2F-DP heterodimerization region 163 277 IPR037241 -
Viun11g02775 341 MobiDBLite consensus disorder prediction 12 35 - -
Viun11g02775 341 Gene3D - 69 161 IPR036388 -
Viun11g02775 341 CDD DP_DD 161 264 IPR014889 -
Viun11g02775 341 Pfam Transcription factor DP 164 277 IPR014889 -
Viun11g02775 341 SMART DP_2 163 323 IPR014889 -
Viun11g02775 341 MobiDBLite consensus disorder prediction 1 36 - -
Viun11g02775 341 PANTHER TRANSCRIPTION FACTOR DP 21 279 IPR015648 GO:0005667|GO:0051726
Viun11g02775 341 PIRSF Txn_factor_DP 7 328 IPR015648 GO:0005667|GO:0051726
Viun11g02775 341 Gene3D Transcription factor DP 162 282 IPR038168 -
Viun11g02775 341 SMART E2F_TDP_2 73 156 IPR003316 GO:0005667|GO:0006355
Viun11g02775 341 MobiDBLite consensus disorder prediction 53 77 - -
Viun11g02775 341 SUPERFAMILY "Winged helix" DNA-binding domain 76 157 IPR036390 -
Viun11g02775 341 MobiDBLite consensus disorder prediction 275 306 - -
Viun11g02775 341 MobiDBLite consensus disorder prediction 275 316 - -
Viun11g02775 341 Coils Coil 172 206 - -
Viun11g02775 341 FunFam Transcription factor-like protein DPB 68 161 - -
Viun11g02775 341 FunFam Transcription factor-like protein DPB 162 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02775 Viun-Chr11 40184333 40187671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02775 74 274 E2F-DP Transcription Factor Family AT5G02470 54.455 4.40e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun11g02775 DP 5.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02775 K04683 - gmx:100798342 553.518