Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02726 ATGGAGTTTGTGGGGAAGACAGTTAAGAAAGAGGTGAAGGGGGTTGGGATTATTTCGGGAACAGTGAAATCGTACGACCCTGCCTCTGGTTTTGTTGAGATCGTTTACGAAGACGGTGATTCTGAGGAGTTGGAGTCTTCTGAGGTGGCTTCTCTCTTGCAATTTCAACCGGAGAGTGTCAAGGCTAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGTCGCTGCATGGAGCGGAAGCGCGATGCGGAAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGAGGCGGAGGGTAGTGGTTTTAGAGGGGTTTTGGATGGGGATGTTTCTTCAGCTAGTGGTGGGGGTTTGGATTTAGATAGTGGTGTGATAGAGAGAAATTTGGATGGTATAGTTGAGAATGGAGGGAATCTTGAGGACAATGTTAATGGGACTAAGGAGGAAAATGGGGTTAGAGAAACTCTGATAGAGGAAGTTGCCTTAGAAGATAGTTTGAACAAGGGTTTATCTGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAGGCTTAATATGGATGAGGATTTAAATTTGGATGTGAGTAATGAAGATGGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTTAGTAATGAGGATGACGTTGACCCGGGAGGGGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAACGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACTCGGTGTGATGATGACGGAAATGGACATTCTGAGGTGGGTAATGTTTTGTTTGGTAAGATGGGGCTGTCCCAAAAGGAAGAGATAAATGTCAATTATAGTTCTGTGGAAGATGACAGTATTAGTGGTAATTTGCATCACGCCTTTGATGCGGTTAAACCGGAGGTAATTAATGTTTCTGCTGATCATCCATCTAAAGAAGGTTCTTTGTGTTTGGTTGAGGAGAATGGAGGAGACAGTCACAAAGATGACACAGGGGCTATTAATTCTCATCAGATCTCAAGTGCAATTTCGGTTAGGGATTCAGATTTTGGGGAGGCTCAGCGAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATGAATACCAAGATGATCCAGGAAGTCCTTGCAAACAAGAAAAATTCCTAGATGTTTCAGGAAGTCCATGCAAACAAGAAAATAGCAGAAGGAAAAGAAGAAAGTTATCAAATAATCCAGGAGCCATGCCAGAGACAGTTTTAAGGAGGAGCTCTCGTCGAGCATCAGCTATAAAAGGGGTTTCAAGCACCTTAGAAGTGGAAGTGGCTGATGATCCTTTGGTAACCTTGGAAACTGATGCCTTAACAGAAGAAAAACCTCTAATCCCTGGTTCTCAGAAATCTGAGCAATATAACAATGATCTGAGATACAGGCAATGCAACAATGTTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGATGTTCCTGTTCTTGAACTGTTTTCTATTTATGCCTGTTTAAGATCATTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGCTGCACTGAAGTCTGAAATTCCAAGTATATTATTTGACAGTATTCATGTTTCTATTTTGCAAACTCTGAGGAAGCATTTGGAATACCTTTCCAATGAGGGTTGCGAGTCTGCATCCAATTGTCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACGTGGCCTATTTTCATGGCAGAGTATCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTATAGACAACCTGTAATTGTGAAGGTCGAGATTCTCCAGTACCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACACATCCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTGGATGAGACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCACGATGTGTGGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCAGACCTATTAGGGATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCGGTTACCTGTTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTACTACCACCGAAATGATATACATTTAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATGGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAAAGCTAACTTGAGTGTGGGGAATAGTGTCTTTAATCAAAGTTCCGGCAAGAACATGCAGATGAAGGGAGAATATTCTACTGTGTATACATCTTTGGCACCTTCTACTTCAGAGACATGTTTGGACAATAATCAGGCCCATGATCAAGGAAAGTTGGATGAAAATTCAACTATTGACTGTTGTATGCGACTTGGCCAAGAGTTTCCAAAAGTTGGGAACTGCCTAGACTCAACGATCACCATAGAAAGTCCTTGCGTTGTTTCAGATGGATCAGCTGATACCACACAGACGAGAACGGGCACCAACAATGTTCAGACGTGTGGGCTCAATGATTTCAATAGATGTAATGAATCTTTGAATCAGCCAGGAGTACCAGAAAGACACTATCCTGACTGTTCTTTGACATCTTCCAGCTTGGATGTGGGGCATAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCGGACAGTAAGGATACTTCAGAAGCACCTTATGGAATTGAGTATGTAAACTATTATAGTTTTGCCCGAACAGCTTCATTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAAAAAATGAATAAGCTTTTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAACCAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCGAACTGGATGCAGCTGCTCAAAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCTAATGAAGACAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCCAATAGCACTTTGGTTGGGCTTCAACCCAGGAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTCGAGGTTCGGTTACGTGGGCTTTTATTGGGTCCATGGCTGAATCTGCATCAAACAAATCTTTGGCATAAAGATCTTTTGAAGACATCTGATTTTGTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAACTTGCGGCTTTTTGCACTTTCGGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGGTCTGCTATTCATATTGTGATTAATTCATCACGCACATCTTCCAGGCATGGTATTGCAAAGAAAAGGGCCAGGTATTCAGATACTGAAACCAGTTCATCTTCAAACGGTGCTAGTGGTTTGGGAATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCACTCCTTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAAGAAGATACCAGGAATTCTATATCTTGAGAACTCAGACTTTGCACGGAGAAGCAGATCTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCATTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATTCCGGATGTTGTTATTAAACATGGCTCTCTGTTGGAACAATCCTCTAGTGAAAGAAAAAAATATTGGCTAGAGGAATCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTTCGCAAGTCCACTGATAAGAAACTTGGAAAAATGCTTGAGATTGGTAAAGTAAACAAGAAAATTCCTCAGGAAAGGGGATTTTCATATCTGTTTACTAGATTGGAAAGATCTGATTGTCATCAATGCGGACACTGCAACAAAGATGTTTCAATGAGGGATGCTGTCAGGTGTCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTAGCACAACAGCTACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGTTGCATGCAAAGACTAATACCAATAAAAGAAAAGTTGGCTCAAAATTGCAAAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTAAGTCACTAAACCTCAAGGGCAACAAGAAGGCATTGAGTAAGGTACGCCAGGGAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGCCGATCTACTAGGAAGGCCAAATCCCTGTATATGCAAAGTCAAATGAATGGTGGACGTAAAAAAGGAAGGCCAGGTAAAAAGAACGTGGGACGTAAAAAGGGAAAGCAAAGTAAATCCAAGAAGGTGACCAATCCGGAGCCCAATGAACCTACTGGTGAATATACGAAGTTAGCAGTAACTAGACGAGGGACGAGAACAAAATTCTGTAGCAGTTATTGGCTTAATGGTCTTCAGTTGTCTCGAAAGCCAAATGACGAGCGAGTAATGCTATTTAAAGAGAAGAAGACTATTGTCTCCTCCGAAGACTTTTCTGGCTCTCTTGACTGTCTTAACTGCTGCCTTTGTTGTGGAAATGGATACACCTTGAATTATATTGCATGTGAAATATGTGGAGGTGACTACTCTTCTCATTTGTGTTTTCTCCTTTTGGGCTCGGGGATGAGTGTGGAAAGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGAGAATGTCAAACAACTTATTGGATTTAAGTGCCATGTTTGTCTGGATAGAACTGCTCCAATCTGTCCTCATGTGAAAATTAATGCATTGTCTCGTCCTGAAAGCAGTGCTGCAAATGAGTCTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTAAGCGAGGTTTGA 5298 0.413 MEFVGKTVKKEVKGVGIISGTVKSYDPASGFVEIVYEDGDSEELESSEVASLLQFQPESVKAKPRVGRKPKKRRCMERKRDAEAGSGNVRENLEAEGSGFRGVLDGDVSSASGGGLDLDSGVIERNLDGIVENGGNLEDNVNGTKEENGVRETLIEEVALEDSLNKGLSGNVSCVKDGLDLNARLNMDEDLNLDVSNEDGLKRRDCIDLNLDVSNEDDVDPGGEAMQRECNFDLNVEVVCEEGKETRCDDDGNGHSEVGNVLFGKMGLSQKEEINVNYSSVEDDSISGNLHHAFDAVKPEVINVSADHPSKEGSLCLVEENGGDSHKDDTGAINSHQISSAISVRDSDFGEAQRVDCPSEGGIAIIHEYQDDPGSPCKQEKFLDVSGSPCKQENSRRKRRKLSNNPGAMPETVLRRSSRRASAIKGVSSTLEVEVADDPLVTLETDALTEEKPLIPGSQKSEQYNNDLRYRQCNNVLPKLQLPPSSTNLNLDDVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEYLSNEGCESASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDIKHLMFRTDYYRQPVIVKVEILQYLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDTSKKRRAVMDVSGGSCLTEENVDETTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGMDMDGSVYFNSCGYLLVSSSSEAGPLFYYYHRNDIHLVIEALKSMGPLYGGILMAIYKHWDIKANLSVGNSVFNQSSGKNMQMKGEYSTVYTSLAPSTSETCLDNNQAHDQGKLDENSTIDCCMRLGQEFPKVGNCLDSTITIESPCVVSDGSADTTQTRTGTNNVQTCGLNDFNRCNESLNQPGVPERHYPDCSLTSSSLDVGHKINLRSVGASSTPSPDSKDTSEAPYGIEYVNYYSFARTASFVAQELMCKSPEKMNKLFAMSEEEFISDQTKVIMKKSTNFCWPSIPELDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTLVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFVRVKRLLLLLESNLRLFALSADWLKHVDSVPTMGSAIHIVINSSRTSSRHGIAKKRARYSDTETSSSSNGASGLGMYWWRGGRLSRKLFNLKALPHSLVTKAARQGGCKKIPGILYLENSDFARRSRSVAWRAAVEMSTSAEQLALQVRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCIEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEEKRIVRKSTDKKLGKMLEIGKVNKKIPQERGFSYLFTRLERSDCHQCGHCNKDVSMRDAVRCLHCKGYFHKRHVRKSGSTTATGSTYSCHRCQDGLHAKTNTNKRKVGSKLQKIQAKKRKTVPSVCKSLNLKGNKKALSKVRQGRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRKKGRPGKKNVGRKKGKQSKSKKVTNPEPNEPTGEYTKLAVTRRGTRTKFCSSYWLNGLQLSRKPNDERVMLFKEKKTIVSSEDFSGSLDCLNCCLCCGNGYTLNYIACEICGGDYSSHLCFLLLGSGMSVERDWFHGDAFGLNVENVKQLIGFKCHVCLDRTAPICPHVKINALSRPESSAANESAEELSNPVSLQPLSEV 1765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02726 1765 ProSiteProfiles Zinc finger PHD-type profile. 688 735 IPR019787 -
Viun11g02726 1765 SUPERFAMILY FYVE/PHD zinc finger 1427 1488 IPR011011 -
Viun11g02726 1765 SUPERFAMILY FYVE/PHD zinc finger 674 733 IPR011011 -
Viun11g02726 1765 CDD PHD1_AIRE 690 732 - -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 1489 1503 - -
Viun11g02726 1765 ProSitePatterns Zinc finger PHD-type signature. 691 732 IPR019786 -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 1489 1599 - -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 60 88 - -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 1746 1765 - -
Viun11g02726 1765 SMART PHD_3 1432 1479 IPR001965 -
Viun11g02726 1765 SMART PHD_3 690 733 IPR001965 -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 1565 1583 - -
Viun11g02726 1765 Pfam PHD-finger 691 732 IPR019787 -
Viun11g02726 1765 Pfam DDT domain 497 549 IPR018501 -
Viun11g02726 1765 ProSiteProfiles DDT domain profile. 493 553 IPR018501 -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 370 419 - -
Viun11g02726 1765 SMART testlast3 493 553 IPR018501 -
Viun11g02726 1765 PANTHER PHD FINGER FAMILY PROTEIN 2 1728 - -
Viun11g02726 1765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 751 IPR013083 -
Viun11g02726 1765 MobiDBLite consensus disorder prediction 1530 1560 - -
Viun11g02726 1765 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 617 639 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02726 Viun-Chr11 39857514 39869556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02726 1 1734 PHD Transcription Factor Family AT5G12400 39.336 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun11g02726 DDT 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02726 - - vun:114169688 3425.57