Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02718 ATGGGATTTGTGTGGCAAGAAGAAGGTTCGTCTTCTGTGAGTTCTTCACTGCAACTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGCTTAGAGATATGAAATCCGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAATCATGTAGCTGCTGGTAATCTTGAAAATGCAAACACCACACTTGAGCAGATTTCCCTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATCGCGGCGTATTTCATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCGACTAAAGTAACTATGCTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAAGTGGCATATGTTCTCACAAATCAGGCCATCATTGAGGCAATGGAGGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCTCTCATCCAAGTTTTGAGTGCTCGACCAGAAGGCCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAAGGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAAGCAGAAAAATTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAACTAGAAAATCTCGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCGCCTCGTCTGTTAAAAGGCTCAAACGGATTTCACCTGCAAAGAGTTCTCCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGGTGAATGGCTACACCCCAAGTCCTGACTCAACCTCGTCATCACCGGCATCTTTAACACCTTCCAATTCAATGAACATGGAGAGTTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGTAACCATAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACAGTCTCTAGAACCTCGTTGGAGAGATTAAGGGTGGAGAAGATGATTTTTGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGAAAGAAAGGAGAGACATGAAAAGCTTGAAAAGTGGTTTCAGAGATTTGACCAAGCTGGGTTTGGTAATGTTCCTTTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCATCCAGAGCTATGGCTGTGAAGGATACAGAATGAGAGATGAAAATGGCTGTGTATTAATCTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1431 0.4326 MGFVWQEEGSSSVSSSPXQLFSMMSLSPSLGSPNNLLLRDMKSEERGLYLIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTKVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIIEAMEGEKVIHIIDLNAAEAAQWIALIQVLSARPEGPPHLRITGIHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKGSNGFHLQRVLPLSQTTLGDMLEKDMVNGYTPSPDSTSSSPASLTPSNSMNMESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPERKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFIQSYGCEGYRMRDENGCVLICWQDRPMFSISAWRSRK 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02718 477 Pfam GRAS domain family 50 474 IPR005202 -
Viun11g02718 477 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 473 IPR005202 -
Viun11g02718 477 ProSiteProfiles GRAS family profile. 41 474 IPR005202 -
Viun11g02718 477 MobiDBLite consensus disorder prediction 297 320 - -
Viun11g02718 477 MobiDBLite consensus disorder prediction 302 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02718 Viun-Chr11 39820106 39822392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02718 6 477 GRAS Transcription Factor Family AT1G50420 64.865 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g02718 GRAS 3.7e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02718 - - gmx:100814131 828.165