Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02712 ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGACATGAAAACCAAGCGACCCGTTGACACCGCAGATTCTGCCGCCGATCAGCCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACAGCCACCGAGGAAGACCAGGCGTTCGATCCGCAGTCTCACGCCGGCGAGTCCACCGGCCTCAAACTCCTTGGCCTCCTCCTCCAATGCGCCGAGTGTGTTGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCTGAGCTCTCGTCGCCGTTCGGAACCTCGCCGGAGCGCGTCGGGGCGTACTTCGCGCAGGCGCTGCAGGCGCGTGTGGTCAGCTCCTGCCTCGGCTCGTACTCTCCGCTCACTGCGAAATCTGTAACCCTAACGCAGTCGCAGCGAATCTTCAACGCCTTCCAGTCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAGTGGCCGGGATTGTTCCACATCCTCGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCTTCGTCCGAGCTCCTCGACTCCACCGGCCGGAGACTCGCGGATTTCGCGAGCTCGCTCGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACGGAACTGAGTCAACTCGGCGTTCGAGCTAGCGAGGCGATCGTGGTGCACTGGATGCATCATTGTTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTAAGCCACGCCGGAAGCTTCCTCGCGCGGTTCGTGGAAGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGCCTTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGGACCGGAGAGGTTAAGGTGGAGCGGTGGGCGGAAGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGAAACCCTGCCGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGTTATACGCTGGTTGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTCTCTCTGTTGATTGCCTCTGCTTGGCAACCCTCTGATTTGATTACTTACCCTGATTGA 1314 0.586 MLQSLVPRSPRTSNPNDMKTKRPVDTADSAADQPSFKRTNFSADTATEEDQAFDPQSHAGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRASEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWAEELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02712 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 423 IPR005202 -
Viun11g02712 437 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g02712 437 MobiDBLite consensus disorder prediction 1 41 - -
Viun11g02712 437 ProSiteProfiles GRAS family profile. 58 428 IPR005202 -
Viun11g02712 437 Pfam GRAS domain family 69 428 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02712 Viun-Chr11 39762845 39765345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02712 18 431 GRAS Transcription Factor Family AT5G41920 66.983 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g02712 GRAS 4e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02712 - - pvu:PHAVU_011G024600g 799.66