Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02710 ATGGCTTTCCTTCTTCTCTTTCTCCTCTCCCTTCTCTCTTCTTCTGTCACTGCCTGCGATCGCTGCCTGCATCAATCCAAGGCTTCCTTTTTCACCAAAGACTCTGTTCTTTCATCTGGGGCATGTGGGTATGGGTCTCAGGCACTGGACTTAAGTGGTGGAAACATCGCAGCTGGTGTGGCCTCTCTCTTCAAAAATGGAGCCGGTTGTGGTGCCTGCTTTCAGGTAAGATGCAAGAACCCAAGTGTTTGCAGCAAACAGGGCACCAGAGTGGTGTTGACCGATCTTAATCAAAACAATCAAACCGACTTTGTACTCAGCAGCAGAGCTTTCTTAAGCATGGCCGAGAAGGGGAAGGGCAAAGAAATATCGAAACTTGGCATTGTTGACATTGAATACAAAAGAGTACCTTGTGTTTACAAGAATCAGAATTTGGCGGTCCGCGTAGAAGAAACAAGCAAGAAGGCAGATTATTTAGCAGTTAAATTCTTGTACCAAGGAGGTCAAACAGAGATTGTGAGCGTTGATGTGGCTCAGGTGGGGTCTGCGAATTGGAGCTTCTTGAGCAGAAACCACGGAGCGGTGTGGGACACGAGTAGGGTACCGAGAGGTGCATTGCAGTTTCGTTTTGTGGTAACAGCAGGGTATGATGGGAAGTGGATTTGGGCGAAGAAGGTGCTACCTGCTGATTGGAAAAACGGTGTCGCATATGATTCTGGGGTTCAGATAACAGACATTGCACAAGAGGGTTGTTTCCCCTGTGATGATTCAAGCTGGTGA 780 0.4769 MAFLLLFLLSLLSSSVTACDRCLHQSKASFFTKDSVLSSGACGYGSQALDLSGGNIAAGVASLFKNGAGCGACFQVRCKNPSVCSKQGTRVVLTDLNQNNQTDFVLSSRAFLSMAEKGKGKEISKLGIVDIEYKRVPCVYKNQNLAVRVEETSKKADYLAVKFLYQGGQTEIVSVDVAQVGSANWSFLSRNHGAVWDTSRVPRGALQFRFVVTAGYDGKWIWAKKVLPADWKNGVAYDSGVQITDIAQEGCFPCDDSSW 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02710 259 Gene3D - 11 138 IPR036908 -
Viun11g02710 259 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Viun11g02710 259 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Viun11g02710 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Viun11g02710 259 PANTHER EXPANSIN-B3 9 242 - -
Viun11g02710 259 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Viun11g02710 259 CDD DPBB_EXLA_N 16 140 - -
Viun11g02710 259 Gene3D - 139 244 IPR036749 -
Viun11g02710 259 SMART dpbb_1 56 133 IPR007112 -
Viun11g02710 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Viun11g02710 259 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Viun11g02710 259 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Viun11g02710 259 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Viun11g02710 259 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Viun11g02710 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Viun11g02710 259 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Viun11g02710 259 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Viun11g02710 259 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Viun11g02710 259 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Viun11g02710 259 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Viun11g02710 259 FunFam Expansin-like A2 140 244 - -
Viun11g02710 259 Pfam Lytic transglycolase 57 133 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02710 Viun-Chr11 39735445 39737092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02710 18 259 Expansin Gene Family AT4G38400 64.344 1.82e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02710 - - gmx:100819849 436.032