Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02704 ATGGAAGCTATTTTCGTTCCCAAACCAGCTTCTCATTCTCACTTCAAAACTAAATTTTCTCCAAACCCCAAACACGTCCTTAAACAACAACCATTTCTCCACGTCCGCCAAAACCCCACGCGCTTCCGCCTCGTCACCGCCGCACTCCAAAACCAACAAGAAGCAGCAGCAGCAGCTTTCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACGCCGCCGCTGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCGTCGTGGGTTCCGGCAGACTTCATCGCAAAAGACGTCGTCGCGGAGTACGAAACCCCGTGGTGGACCGCCGCGAAGAAGGCGGATGAGCCCGCGCTGAGGAACATCCTCGAATCCGGCGACGGCCGTGATGTCGACGCTGTGGACGCGGAAGGTCGCACCGCGCTGCTCTTCGTAGCGGGACTTGGCTCCGAACCGTGCGTGAAGCTGCTGGCGGAAGCCGGCGCAAACCTGGACCACCGCGACCGCAGCGGTGGTCTCGCTGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGCGTGGCGAAGGTGCTGCTGGATCTCGGCGCGGATCCTGAGGTGGCGGATGACCGTGGAAGAACGGCGTTGGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGATGCAGTTCGGGCGCAGGATTGGACTTGAGGGAGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCGGAGGTGGAGGAGATTCTTGAACGGAGAGGGAAGGGAGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCGAATGATTGGGTGAAGGCGAAGTTTGTGGCGGAGGATCTTGTCAGAGACTACGAGGCCGGGCTTGAATACGCCGTGGCCGAGGCTGTGCTTGCGAAAAGGGTCGCGGATGAAGGGACGCCCGAGTTTTTAGTTAAATGGGCCGATTTGGATGAGCCCACTTGGGAGCCCCAGGAGAATGTGGACCCTGACCTTGTGAAAGCGTTCGAGGAAACCAACAACCAGGCCCAGCCCAGCAGTAATGGGCCTGCTGTCGTTGTTTCCACTCAAGATAACCCGTAA 1134 0.5908 MEAIFVPKPASHSHFKTKFSPNPKHVLKQQPFLHVRQNPTRFRLVTAALQNQQEAAAAAFKDTEDESYGEVKGIIGSRALDAAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNILESGDGRDVDAVDAEGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGGANDWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLDEPTWEPQENVDPDLVKAFEETNNQAQPSSNGPAVVVSTQDNP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02704 377 Pfam Ankyrin repeats (many copies) 168 223 IPR002110 GO:0005515
Viun11g02704 377 ProSiteProfiles Chromo and chromo shadow domain profile. 309 365 IPR000953 -
Viun11g02704 377 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
Viun11g02704 377 Gene3D - 305 357 - -
Viun11g02704 377 MobiDBLite consensus disorder prediction 354 377 - -
Viun11g02704 377 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Viun11g02704 377 ProSiteProfiles Chromo and chromo shadow domain profile. 259 288 IPR000953 -
Viun11g02704 377 SMART ANK_2a 113 144 IPR002110 GO:0005515
Viun11g02704 377 SMART ANK_2a 182 211 IPR002110 GO:0005515
Viun11g02704 377 SMART ANK_2a 148 177 IPR002110 GO:0005515
Viun11g02704 377 MobiDBLite consensus disorder prediction 353 377 - -
Viun11g02704 377 SUPERFAMILY Ankyrin repeat 114 225 IPR036770 -
Viun11g02704 377 Gene3D - 65 112 - -
Viun11g02704 377 Gene3D - 255 304 - -
Viun11g02704 377 Gene3D - 113 254 IPR036770 -
Viun11g02704 377 SUPERFAMILY Chromo domain-like 65 118 IPR016197 -
Viun11g02704 377 Pfam Chromo (CHRromatin Organisation MOdifier) domain 311 355 IPR023780 -
Viun11g02704 377 SUPERFAMILY Chromo domain-like 307 356 IPR016197 -
Viun11g02704 377 SUPERFAMILY Chromo domain-like 257 304 IPR016197 -
Viun11g02704 377 CDD CD3_cpSRP43_like 306 354 IPR030300 -
Viun11g02704 377 PANTHER MYOTROPHIN 44 250 - -
Viun11g02704 377 ProSiteProfiles Ankyrin repeat region circular profile. 182 214 - -
Viun11g02704 377 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Viun11g02704 377 SMART chromo_7 308 358 IPR000953 -
Viun11g02704 377 SMART chromo_7 67 119 IPR000953 -
Viun11g02704 377 SMART chromo_7 257 307 IPR000953 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02704 130 223 CAMTA Transcription Factor Family AT5G09410 37.000 3.87e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02704 K12271 - gmx:100818382 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02704 11 39698477 39700110 Viun11g02704 11 39698477 39700110 ECH