Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02691 ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTAAGGAGGGATCGACTCAATGAACAATTTGTAGCGCTGGGCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACCATTCAATTGCTAGAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTAACTGAAGAATCTTGCGAGTTGGCTCGCGAGAAAATTGATCTTAGAGAAGAAAAGACTTCTCTTAAATCGGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTGATGGTAGTTCCATCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAGCCCTTGTTCAACTTATGTTCCTTGTTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGACTCCAGAAACAAATGCAAGGAGAGCATGGTTGAAAAACATGAGGATTCAAATGATGTCACTGCAGACCAGACTTACGGGTCTTCTGCAGACCAGGACTTGCCATCTGGGAAAATAAAATCTAGCGAATTGTCAAGGAGGCAAAGCAGTTGCGCTGAAGTGAGTTCGTTAGGTAGGTGCTCTTCATCTAGTAGTGTTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAACACAAAGGCTAG 831 0.4308 MDCTAARRTQKADREKLRRDRLNEQFVALGNILDPDRPKNDKATIIGDTIQLLEDLTSQVSKLKDEYAALTEESCELAREKIDLREEKTSLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVVPSSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPSPCSTYVPCLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQDSRNKCKESMVEKHEDSNDVTADQTYGSSADQDLPSGKIKSSELSRRQSSCAEVSSLGRCSSSSSVQESSSSSVVHEHKG 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02691 276 Gene3D - 4 82 IPR036638 GO:0046983
Viun11g02691 276 MobiDBLite consensus disorder prediction 196 216 - -
Viun11g02691 276 Coils Coil 46 73 - -
Viun11g02691 276 MobiDBLite consensus disorder prediction 182 276 - -
Viun11g02691 276 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Viun11g02691 276 CDD bHLH_AtILR3_like 11 85 - -
Viun11g02691 276 PANTHER TRANSCRIPTION FACTOR BHLH121 2 274 IPR044579 GO:0003700|GO:0006879
Viun11g02691 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Viun11g02691 276 Coils Coil 81 108 - -
Viun11g02691 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Viun11g02691 276 SMART finulus 12 62 IPR011598 GO:0046983
Viun11g02691 276 MobiDBLite consensus disorder prediction 217 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02691 Viun-Chr11 39662106 39664996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02691 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.983 9.63e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g02691 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02691 - - gmx:100817000 382.874