Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02681 ATGCCGAATCCTAGAGTCTTCTTCGACATAACCATCGGCGGCCAACCCGCCGGCAGAATCGTGTTTGAGCTCTTCGCCGACACCACTCCTCGCACCGCCGAGAACTTCCGCGCCCTCTGCACCGGTGAGAAGGGAGTCGGTCGGAGAGGCAAGCCGCTCCACTACAAAGGCTCGATCTTCCACCGTGTGATCCCGAACTTCATGTGCCAGGGCGGCGACTTCACCGCCGGAAACGGCACAGGCGGCGAATCGATCTATGGTGCCAGGTTCGCCGACGAGAACTTTGTGAAGAAGCACACCGGTCCCGGCATTCTCACCATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACAACGAAGACGGAGTGGCTCGACGACAAGCACGTGGTGTTCGGACAGGTCGTTGAGGGACTGAACGTGCTGAAGGAGATCGACGACAAGCACGTGGTGTTAGAATACTTGTCGTTTTTAGAAAAGAAGACTGGTGCAGAATTATCACAATAA 519 0.5665 MPNPRVFFDITIGGQPAGRIVFELFADTTPRTAENFRALCTGEKGVGRRGKPLHYKGSIFHRVIPNFMCQGGDFTAGNGTGGESIYGARFADENFVKKHTGPGILTMANAGPGTNGSQFFICTTKTEWLDDKHVVFGQVVEGLNVLKEIDDKHVVLEYLSFLEKKTGAELSQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02681 172 PIRSF Peptidylpro_ismrse 1 161 IPR024936 GO:0003755
Viun11g02681 172 SUPERFAMILY Cyclophilin-like 2 152 IPR029000 -
Viun11g02681 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Viun11g02681 172 CDD cyclophilin_ABH_like 4 149 - -
Viun11g02681 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 155 - -
Viun11g02681 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 151 - -
Viun11g02681 172 Gene3D - 1 157 IPR029000 -
Viun11g02681 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 151 IPR002130 GO:0000413|GO:0003755
Viun11g02681 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 151 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02681 Viun-Chr11 39606004 39606689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02681 18 163 U-box Gene Family AT5G67530 45.395 5.47e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02681 K01802 - gmx:100527355 286.189