Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02668 ATGAATGATTGTGACAGCCCAGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCTCAGGACAGTTTCCACCCAAAGCTAAAGTTGAACCCTTACTCATGGAACAAAGCTGCCAATCTTTTGTTTTTGGAAAGCCCTGTTGGGGTGGGATTCTCCTACACCAACACCAGCAGTGATTTGGATGAGCTTGGTGACGCCATTACTGCTAAAGATTCACACACCTTCATAGTCAAGTGGTTTCGGAGATTTCCACAATTCAGATCACACGAGTTCTACATTGCTGGCGAAAGTTATGGAGGGCACTACGTTCCACAACTGTCGGAGCTCATTTTCGATCACAATCGCAATCGTGCCAAGAAAGACTACATCAACTTCAGAGGATTCATGATTGGAAATGCAGCATTGGACTACGAAACAGATCAAAAGGGTTTGGTGGAGTATGCCTGGGATCATGCAGTGATATCTGATGAATTATACCATAACATTACAACCAGATGCAATTTCAAACTTCAAAATCAAACAGATGAATGCATCGACGATCTGTCTAATTTCTCCGTAGCGTATGACGTTATTGACATGTATAGCTTGTACACTCCCACATGTCTCAACAGCATCAGCAGCAACACAGCCCCTGTCGTCAGAGGCACAACCTCAGAAACTTTTTCCAAAATTAATAAGTGGCATAGAAAAGCAGAGGGATATGATCCATGTGCATCCGATTACACTGGATTTTACCTAAACAGGCCAGAAGTCCAAAGGGCACTACATGCCAATGTCACCAAACTCTCCTATCCATGGACTCATTGCAGTAGCCTCATGGGACCTTGGAAAGATTCACCACTGTCCATCCTTCCTGTCATCAAGAAGCTTGTTGCTGGTGGTCTTCGCATTTGGGTTTACAGTGGAGATACCGATGGAGCAGTTCCTGTGACTGGAACAAGATACACTCTGAAAAAGTTGGGGCTCAAGATTGTTGAAGATTGGACTCCCTGGTATACTAGCAAACAGGTTGGGGGATGGAGAACGATTTACGATGGTCTTACTTTTGTGACCATAAGAGGTGCTGGCCATCAGGTTCCAACCTACACTCCCAAACCAGCTCTGCAACTGCTACGACACTTCCTTGCAAATAAGAAATTACCTTCTCATCCTATTTAA 1176 0.4439 MNDCDSPGCSSIGYGEAEELGPFFPQDSFHPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTSSDLDELGDAITAKDSHTFIVKWFRRFPQFRSHEFYIAGESYGGHYVPQLSELIFDHNRNRAKKDYINFRGFMIGNAALDYETDQKGLVEYAWDHAVISDELYHNITTRCNFKLQNQTDECIDDLSNFSVAYDVIDMYSLYTPTCLNSISSNTAPVVRGTTSETFSKINKWHRKAEGYDPCASDYTGFYLNRPEVQRALHANVTKLSYPWTHCSSLMGPWKDSPLSILPVIKKLVAGGLRIWVYSGDTDGAVPVTGTRYTLKKLGLKIVEDWTPWYTSKQVGGWRTIYDGLTFVTIRGAGHQVPTYTPKPALQLLRHFLANKKLPSHPI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02668 391 FunFam Carboxypeptidase 289 383 - -
Viun11g02668 391 Gene3D - 289 382 - -
Viun11g02668 391 PRINTS Carboxypeptidase C serine protease (S10) family signature 85 110 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 PRINTS Carboxypeptidase C serine protease (S10) family signature 49 59 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 PRINTS Carboxypeptidase C serine protease (S10) family signature 353 366 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 PRINTS Carboxypeptidase C serine protease (S10) family signature 36 48 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 Pfam Serine carboxypeptidase 7 383 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 Gene3D alpha/beta hydrolase 5 209 IPR029058 -
Viun11g02668 391 SUPERFAMILY alpha/beta-Hydrolases 7 386 IPR029058 -
Viun11g02668 391 Gene3D - 243 279 - -
Viun11g02668 391 ProSitePatterns Serine carboxypeptidases, serine active site. 99 106 IPR018202 GO:0004185
Viun11g02668 391 ProSitePatterns Serine carboxypeptidases, histidine active site. 353 370 IPR033124 GO:0004185
Viun11g02668 391 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 370 IPR001563 GO:0004185|GO:0006508
Viun11g02668 391 FunFam Carboxypeptidase 239 386 - -
Viun11g02668 391 FunFam Carboxypeptidase 46 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02668 Viun-Chr11 39552289 39554780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02668 250 386 Calmodulin-binding Proteins AT2G22960 27.536 4.20e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02668 K16297 - gmx:100807887 644.81