Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02627 ATGGGCAAGTCTAGCAAGAAATCAGCTGTCAAGGTTGACGCCGCTCCAGCTGCTGTTCCGCCATCCAAATCCGCGAAGAAGGGTGGCAAGCGACAAGCTGAAGAAGAAAGTGAGAAAGCGATTGCAAAAAAACAGAAGATAGAAGAGGTTGTGCAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAAGGAGAGCAGTTCTGACGATTCTTCTTCTGAAGATGAGAAACCTGCTGCTAAACCTGCTGCTCTTCCAAAGAAGACCCCTGCTAATAATGGTGCTGTAAAAGCCCCTGCAAAGAAAGGAAAACCAGCTTCCAGTTCTTCTGAATCATCTGAAGATGACTCTTCTGATGAGGACGAAGTGAGTGCAAAGAAGCCACAGAAAGTGGCAGCCGCGAAACAAAAGAAAGCTGCACCACTGCCCAATAAAAAGGAGAGTAGCTCAGATGATTCTTCTTCAGAGTCTGAGGAGGAGAAGCCTGTACCAAAAGCTGTCGTGCCTTCACAAAAGGCTCCTGCTAAAAATGGTGCCCCAGCAAAGAAAGGCAAGCCAGTTAGCAACTCGGAGTCTTCTGAAGATGACTCCTCTGAAGATGAGAAACCAGCTGCCAAGAATGGCTCTGTAACTGCCGCTGCAAAGAAAGGCAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTCATCTGAGGAGTCCTCTGACGAGGATGATGTTCCAAAAACCAAGGTGGTCCCTGCTGCAGGGAAGAATATAGCGTCTTCTAACAAGAAGACTCAGCCTAGTGGAGGTTCTGACTCTGATAGCAGCTCTGATGAGGACGATAAAAAGAAAACATCTGCAACTACAAAGCCGCCTGCCTCATCAGTTGCTCCCGCTAAGAAAGTGGAAAGCTCAGATGATGATTCAAGTGAAGACTCTGATGAAGATGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTTCTGCTGTGCCAAAGAAGAAAGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGATGAAGACGATAAGGAGGCTACCAAAAAGGTTTCCAATGTCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAAAACTAGTGATTCAGAAGAGGAGTCTTCTGAAAGTGATTCTGAAGAGGAAAAGGGAAAGAAGATGGATATAGACGAGGATGATAGTTCTGATGAAAGTGAAAAGCCTCAGAAGAAGAAGGCTGTGAAAAAAGTCAAAGAAAGTAGTGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGAGGAACCCTCCAAAACTCCGCAAAAAAGAGCTAGGGATGTTGAGATGGTAGATGCTGCTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAGAGCGGCTCAAATACTCTTTTTGTGGGGAACCTGGCGTACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCCAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATCCGGAGGGTAATTTTAAAGGATTTGGTCATGTTGAGTTTGCAACAGTTGAAGCTGCGCAGAAGGCTCTTGAGTTGAATGGAGAAGAATTATTGAATCGTCCCCTGCGTCTGGATTCAGCCAGGGTCCGGGACAAGGGTGCTTTTACTCCCAATAGCAGCAATTGGAAAGACTCATCCCAGAGAAGTGGAAGAGGCCAGTCTCAAACACTATTTGTTAGGGGTTTTGATAAATCACTTGGGGAAGATGAGATAAGGGCTAGTTTGGAAGAACATTTTGGTTCTTGTGGAGAGATTACAAGGGTATCAATTCCGAAAGATTACGACACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCTTTGGCAAAGCTCTAGAACTCCATGAAAGTGAACTTGGAGGTTATACCCTCTCAGTGGATGAAGCCAAGCCTAGGGATAATCAAGGATCCGGTGGAGGTGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGCGGTAGGTTTGGCGGCAGTGGTGGTGGACGTTTTGGTGGTAGTGGTGGTGGCCGATTTGGTGGAGGTGGAAGAGGCGGTGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCACCAAATAGATCCATGGCGGAAGGCACAGGGAAAAAGACCAAGTTTAACGATGAAGACTAG 2229 0.4702 MGKSSKKSAVKVDAAPAAVPPSKSAKKGGKRQAEEESEKAIAKKQKIEEVVQKQKKEAKVQKKESSSDDSSSEDEKPAAKPAALPKKTPANNGAVKAPAKKGKPASSSSESSEDDSSDEDEVSAKKPQKVAAAKQKKAAPLPNKKESSSDDSSSESEEEKPVPKAVVPSQKAPAKNGAPAKKGKPVSNSESSEDDSSEDEKPAAKNGSVTAAAKKGKPAAAASSSDSSEESSDEDDVPKTKVVPAAGKNIASSNKKTQPSGGSDSDSSSDEDDKKKTSATTKPPASSVAPAKKVESSDDDSSEDSDEDDDVKPSATAVSKPSAVPKKKVDSSDSDDSSSDEDDKEATKKVSNVKSVPVSKQPVKTSKTSDSEEESSESDSEEEKGKKMDIDEDDSSDESEKPQKKKAVKKVKESSDSSDDDSEEESEEEPSKTPQKRARDVEMVDAASSGKKTPNTPITPNAESGSNTLFVGNLAYSVTRADVENFFQDCGEVVDVRLATDPEGNFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDSARVRDKGAFTPNSSNWKDSSQRSGRGQSQTLFVRGFDKSLGEDEIRASLEEHFGSCGEITRVSIPKDYDTGAVKGFAYMDFGDADSFGKALELHESELGGYTLSVDEAKPRDNQGSGGGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGGGRGGGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFNDED 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02627 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 571 643 IPR000504 GO:0003723
Viun11g02627 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 537 IPR000504 GO:0003723
Viun11g02627 742 MobiDBLite consensus disorder prediction 1 465 - -
Viun11g02627 742 SMART rrm1_1 570 646 IPR000504 GO:0003723
Viun11g02627 742 SMART rrm1_1 468 539 IPR000504 GO:0003723
Viun11g02627 742 MobiDBLite consensus disorder prediction 139 164 - -
Viun11g02627 742 MobiDBLite consensus disorder prediction 547 568 - -
Viun11g02627 742 MobiDBLite consensus disorder prediction 27 81 - -
Viun11g02627 742 MobiDBLite consensus disorder prediction 429 446 - -
Viun11g02627 742 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 335 615 - -
Viun11g02627 742 Gene3D - 458 548 IPR012677 -
Viun11g02627 742 MobiDBLite consensus disorder prediction 449 465 - -
Viun11g02627 742 MobiDBLite consensus disorder prediction 250 265 - -
Viun11g02627 742 CDD RRM1_NUCLs 468 544 IPR034349 -
Viun11g02627 742 FunFam Nucleolin 2 554 694 - -
Viun11g02627 742 Coils Coil 30 64 - -
Viun11g02627 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 569 650 IPR000504 GO:0003723
Viun11g02627 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 543 IPR000504 GO:0003723
Viun11g02627 742 MobiDBLite consensus disorder prediction 543 568 - -
Viun11g02627 742 SUPERFAMILY RNA-binding domain, RBD 566 677 IPR035979 GO:0003676
Viun11g02627 742 SUPERFAMILY RNA-binding domain, RBD 455 566 IPR035979 GO:0003676
Viun11g02627 742 Gene3D - 549 668 IPR012677 -
Viun11g02627 742 MobiDBLite consensus disorder prediction 380 417 - -
Viun11g02627 742 CDD RRM2_NUCLs 570 648 IPR034350 -
Viun11g02627 742 MobiDBLite consensus disorder prediction 643 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02627 Viun-Chr11 39200357 39205786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02627 463 644 Eukaryotic Initiation Factors Gene Family AT4G34110 28.261 4.71e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02627 K11294 - gmx:100779929 491.115