Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02626 ATGGGCAAGTCTAGCAAGAAATCAGCTGTCAAGGTTGACGCCGCTCCAGCTGCTGTTCCGCCATCCAAATCCGCGAAGAAGGGTGGCAAGCGACAAGCTGAAGAAGAAAGTGAGAAAGCGATTGCAAAAAAACAGAAGATAGAAGAGGTTGTGCAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAAGGAGAGCAGTTCTGACGATTCTTCTTCTGAAGATGAGAAACCTGCTGCTAAACCTGCTGCTCTTCCAAAGAAGACCCCTGCTAATAATGGTGCTGTAAAAGCCCCTGCAAAGAAAGGAAAACCAGCTTCCAGTTCTTCTGAATCATCTGAAGATGACTCTTCTGATGAGGACGAAGTGAGTGCAAAGAAGCCACAGAAAGTGGCAGCCGCGAAACAAAAGAAAGCTGCACCACTGCCCAATAAAAAGGAGAGTAGCTCAGATGATTCTTCTTCAGAGTCTGAGGAGGAGAAGCCTGTACCAAAAGCTGTCGTGCCTTCACAAAAGGCTCCTGCTAAAAATGGTGCCCCAGCAAAGAAAGGCAAGCCAGTTAGCAACTCGGAGTCTTCTGAAGATGACTCCTCTGAAGATGAGAAACCAGCTGCCAAGAATGGCTCTGTAACTGCCGCTGCAAAGAAAGGCAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTCATCTGAGGAGTCCTCTGACGAGGATGATGTTCCAAAAACCAAGGTGGTCCCTGCTGCAGGGAAGAATATAGCGTCTTCTAACAAGAAGACTCAGCCTAGTGGAGGTTCTGACTCTGATAGCAGCTCTGATGAGGACGATAAAAAGAAAACATCTGCAACTACAAAGCCGCCTGCCTCATCAGTTGCTCCCGCTAAGAAAGTGGAAAGCTCAGATGATGATTCAAGTGAAGACTCTGATGAAGATGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTTCTGCTGTGCCAAAGAAGAAAGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGATGAAGACGATAAGGAGGCTACCAAAAAGGTTTCCAATGTCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAAAACTAGTGATTCAGAAGAGGAGTCTTCTGAAAGTGATTCTGAAGAGGAAAAGGGAAAGAAGATGGATATAGACGAGGATGATAGTTCTGATGAAAGTGAAAAGCCTCAGAAGAAGGCTGTGAAAAAAGTCAAAGAAAGTAGTGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGAGGAACCCTCCAAAACTCCGCAAAAAAGAGCTAGGGATGTTGAGATGGTAGATGCTGCTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAGAGCGGCTCAAATACTCTTTTTGTGGGGAACCTGGCGTACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCCAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATCCGGAGGGTAATTTTAAAGGATTTGGTCATGTTGAGTTTGCAACAGTTGAAGCTGCGCAGAAGGCTCTTGAGTTGAATGGAGAAGAATTATTGAATCGTCCCCTGCGTCTGGATTCAGCCAGGGTCCGGGACAAGGGTGCTTTTACTCCCAATAGCAGCAATTGGAAAGACTCATCCCAGAGAAGTGGAAGAGGCCAGTCTCAAACACTATTTGTTAGGGGTTTTGATAAATCACTTGGGGAAGATGAGATAAGGGCTAGTTTGGAAGAACATTTTGGTTCTTGTGGAGAGATTACAAGGGTATCAATTCCGAAAGATTACGACACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCTTTGGCAAAGCTCTAGAACTCCATGAAAGTGAACTTGGAGGTTATACCCTCTCAGTGGATGAAGCCAAGCCTAGGGATAATCAAGGATCCGGTGGAGGTGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGCGGTAGGTTTGGCGGCAGTGGTGGTGGACGTTTTGGTGGTAGTGGTGGTGGCCGATTTGGTGGAGGTGGAAGAGGCGGTGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCACCAAATAGATCCATGGCGGAAGGCACAGGGAAAAAGACCAAGTTTAACGATGAAGACTAG 2226 0.4704 MGKSSKKSAVKVDAAPAAVPPSKSAKKGGKRQAEEESEKAIAKKQKIEEVVQKQKKEAKVQKKESSSDDSSSEDEKPAAKPAALPKKTPANNGAVKAPAKKGKPASSSSESSEDDSSDEDEVSAKKPQKVAAAKQKKAAPLPNKKESSSDDSSSESEEEKPVPKAVVPSQKAPAKNGAPAKKGKPVSNSESSEDDSSEDEKPAAKNGSVTAAAKKGKPAAAASSSDSSEESSDEDDVPKTKVVPAAGKNIASSNKKTQPSGGSDSDSSSDEDDKKKTSATTKPPASSVAPAKKVESSDDDSSEDSDEDDDVKPSATAVSKPSAVPKKKVDSSDSDDSSSDEDDKEATKKVSNVKSVPVSKQPVKTSKTSDSEEESSESDSEEEKGKKMDIDEDDSSDESEKPQKKAVKKVKESSDSSDDDSEEESEEEPSKTPQKRARDVEMVDAASSGKKTPNTPITPNAESGSNTLFVGNLAYSVTRADVENFFQDCGEVVDVRLATDPEGNFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDSARVRDKGAFTPNSSNWKDSSQRSGRGQSQTLFVRGFDKSLGEDEIRASLEEHFGSCGEITRVSIPKDYDTGAVKGFAYMDFGDADSFGKALELHESELGGYTLSVDEAKPRDNQGSGGGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGGGRGGGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFNDED 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02626 741 MobiDBLite consensus disorder prediction 542 567 - -
Viun11g02626 741 FunFam Nucleolin 2 553 693 - -
Viun11g02626 741 CDD RRM2_NUCLs 569 647 IPR034350 -
Viun11g02626 741 MobiDBLite consensus disorder prediction 642 741 - -
Viun11g02626 741 MobiDBLite consensus disorder prediction 428 445 - -
Viun11g02626 741 Gene3D - 359 551 IPR012677 -
Viun11g02626 741 MobiDBLite consensus disorder prediction 380 416 - -
Viun11g02626 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 542 IPR000504 GO:0003723
Viun11g02626 741 MobiDBLite consensus disorder prediction 448 464 - -
Viun11g02626 741 MobiDBLite consensus disorder prediction 139 164 - -
Viun11g02626 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 568 649 IPR000504 GO:0003723
Viun11g02626 741 Gene3D - 552 667 IPR012677 -
Viun11g02626 741 MobiDBLite consensus disorder prediction 27 81 - -
Viun11g02626 741 SMART rrm1_1 467 538 IPR000504 GO:0003723
Viun11g02626 741 SMART rrm1_1 569 645 IPR000504 GO:0003723
Viun11g02626 741 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 335 613 - -
Viun11g02626 741 MobiDBLite consensus disorder prediction 250 265 - -
Viun11g02626 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 570 642 IPR000504 GO:0003723
Viun11g02626 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 536 IPR000504 GO:0003723
Viun11g02626 741 Coils Coil 30 64 - -
Viun11g02626 741 MobiDBLite consensus disorder prediction 546 567 - -
Viun11g02626 741 MobiDBLite consensus disorder prediction 1 464 - -
Viun11g02626 741 SUPERFAMILY RNA-binding domain, RBD 565 676 IPR035979 GO:0003676
Viun11g02626 741 CDD RRM1_NUCLs 467 543 IPR034349 -
Viun11g02626 741 SUPERFAMILY RNA-binding domain, RBD 454 565 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02626 Viun-Chr11 39200357 39205786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02626 462 643 Eukaryotic Initiation Factors Gene Family AT4G34110 28.261 4.51e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02626 K11294 - gmx:100779929 491.5