Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02624 ATGTACTTGAGGAGAATACAATGCAGGAGAGATCGAGTATGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGACTCTCTGGTCATCAATACTTTCAATCTTTGTCCCCAAAGACTGCAGTGGAAGAATATGCTTCACATGGAAGGATCATCCCAGAACGTCTTTTAGGTTCATATTCATGTAAACATACTTCATCTACAATTAGTTTTGCTGCTCAGGACAAAAGGCCTAGTTTATGTCATAACAGTACTCAGTTGCGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGGTAGTGATGGAACCAACTTTGATAAAAGGCAGAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTACTGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAGAGGCTAACTATAGAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAGGGATAAGTTTAAAAATGAGTTCATAAGAAGAATTCTTCCTTGGGAGAAAATACATATTTCTTGGGATACATTTCCTTATCATATTCATGAAAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCAACTTTTGGTATTGGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGTTGTATCGTGAGAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTCGATAACAGCATCCTTGCTCCTTATGATATTGATGATGATTTATCATCAGACTACGAATCTGATGATGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTTGAATCAGAGAATGATGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACAGAGGCAAAGTCAGATGCAAGTGACAATGAAGATGCAGTAGCATCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACAATGTCGAGGAATTTGAGAAGATTGTGGCTGGAGAATCTGAAAGTTCGGAGTCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAATCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTACAGACGAGGATAGACCTTTAACTAATGGTCAGAGAGGAGAGGTCTATGAGGTCAATGGCGATCGAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACCTTAGTGATGATCATACGAAACCCCCAATCTATTGGATTCATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCAAAGGGTTGAGGAGATGTTTGACCAGTTATCTGGTCCTATAATATTGATTTGTGGGCAAAATAAAGTACAGTCAGGGTCAAAGGAGAAAGAACAATTTACAATGATACTACCAAATTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGACGAAATTAACAAGCTCTTTTCTAATGTTCTGAGTATACATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGAAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAACATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATTGTTTTGACAAAGCTCAAAGCTGAAAAAGTAGTAGGCTGGGCAAAAAATCACTATTTGTCGTCTTGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGACGAGCCAGGAGACAATGTCACGGAAGTCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGAGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCAAGAACTCGTAATTCTTCCAATGAGAAGGCCAGAGCTTTTTTCTCGAGGAAATCTGTTACGGCCCTGTAAAGGAATTTTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAACGAATTTATGGCAGCCTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTAGGAGCAACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAACTTGGATTCTGAATTTCAGTTAGATAAACTTGCTAACATGACTGATGGATACTCGGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGGAAGCCAGTAGTGGTACAACTTCAATATTAAGGCCTCTCAATTTGGATGATTTTGTTCAGTCCAAAACCAAGGTGGGTCCATCGGTTGCGCATGATGCAACAAGCATGACCGAGTTGAGGAAGTGGAACGAAATGTATGGAGAAGGAGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3063 0.4048 MYLRRIQCRRDRVWALVLQPSKYFFRPRLSGHQYFQSLSPKTAVEEYASHGRIIPERLLGSYSCKHTSSTISFAAQDKRPSLCHNSTQLRAYSSESDGRNASEDKQVHGSDGTNFDKRQNQQEKFGKEVEYCNAHARLGEQEQEEWLNNERLTIENKRRESPFLTRRDKFKNEFIRRILPWEKIHISWDTFPYHIHENTKNLLVECAASHLRHNKFASTFGIGLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDYESDDDNAESGEEGSLESENDDDNEASNEEEWASSTEAKSDASDNEDAVASAEAHLKKVKAAVLRKLVPYNVEEFEKIVAGESESSESSKSNSNDTKSSDKSGCQLKKGDRVKYIGPSVQVTDEDRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENLSDDHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNRNEFFQRVEEMFDQLSGPIILICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEINKLFSNVLSIHPPKDENQLATFKKQLEEDKKIVTSRSNLSILRKVLEEHQLSCIDLLHLNTDGIVLTKLKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAVSRLTSQETMSRKSSQSLKNLAKDEFESNFISSVVPPGEIGVKFDDVGALEDVKKALQELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFQLDKLANMTDGYSGSDLKNLCIAAAYRPVQELLENEKKEASSGTTSILRPLNLDDFVQSKTKVGPSVAHDATSMTELRKWNEMYGEGGNRTKSPFGFGS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02624 1020 MobiDBLite consensus disorder prediction 276 308 - -
Viun11g02624 1020 Pfam ATPase family associated with various cellular activities (AAA) 767 897 IPR003959 GO:0005524|GO:0016887
Viun11g02624 1020 SMART AAA_5 763 900 IPR003593 GO:0016887
Viun11g02624 1020 MobiDBLite consensus disorder prediction 310 325 - -
Viun11g02624 1020 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 725 901 - -
Viun11g02624 1020 MobiDBLite consensus disorder prediction 91 117 - -
Viun11g02624 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 956 IPR027417 -
Viun11g02624 1020 ProSitePatterns AAA-protein family signature. 870 889 IPR003960 GO:0005524|GO:0016887
Viun11g02624 1020 Gene3D - 726 1001 IPR027417 -
Viun11g02624 1020 MobiDBLite consensus disorder prediction 97 117 - -
Viun11g02624 1020 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 169 1013 - -
Viun11g02624 1020 Pfam AAA+ lid domain 922 955 IPR041569 -
Viun11g02624 1020 MobiDBLite consensus disorder prediction 362 378 - -
Viun11g02624 1020 MobiDBLite consensus disorder prediction 359 383 - -
Viun11g02624 1020 MobiDBLite consensus disorder prediction 276 325 - -
Viun11g02624 1020 Gene3D - 899 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02624 Viun-Chr11 39181852 39198121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02624 726 958 Calmodulin-binding Proteins AT3G56690 39.407 2.56e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02624 - - gmx:100812718 1716.44