Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02623 ATGTCGCGCCAGACGACGACGACGGCCTTCACTAAATCGAAGACTCTCGACAATAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGGCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGCAAGAGATTGATTTGTTAAAGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTAGAAAATGGCTCGCTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCGGAATCATTGGTTGCAGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGTGTTATTCATCGAGATATTAAGGGTGCAAACATACTGACAACGAAGGAGGGTCTTGTGAAATTAGCTGATTTTGGTGTTGCTACAAAACTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAGCTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGGAACACTAAGAAATATAGAGGAAGATGATTCTGCAGATGCAGAAGATTCTGGTGGTTATCATAAGAGTGCTTACGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGCGGCTCCTCAGGGCAGAAAATCTCATGAAGACAATGCTTCAGCTCCTAATTTTTCCAATGAAAGAGCAGAGAATGAAGATCATGTTCCATCAGATCAGGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGTAATCTCTCTCCAAATAGAGAAGTTGGTAATTCCGAGGCTACTGGCAGTCATGAAATTTCAAATGAAGAACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATCGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATAGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCGTGCTTAGATGATTTATTCCATCCATTAGACAAACAACCTGGGGATGTTGCAGCAGAGGCATCCACATCTGCATCCACTTCTCATATGGTTAAAGGTAACACACCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGGACAAGCAAACAATGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAACTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAATTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTAATCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTTGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGACCTCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCAAGTTCTTTGACATTACAAATGTTTATTGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCAGCTCAACGCCCCCGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAATGAGGCGTTGCTATCTTCAGTAGACCAGCAAGATCCCTCTAAAGTGAGACGTGGAGTCCTTGATCATCACTTAGAACAGTTACATCCTTCATCCTCCAATCCTCGAAGATCATCAGATGCTAACCACTCCATGGATGATGCCATGTCATTAGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGTTGGTGCATTGAAAGAGCGAGATGTTGAATCCAGACAACGTATCTCCACTACCAGGGCATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCAAATGGGTTATCAGTGACAGGAGGTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAAAGTGTACTCCCTTTATTACATGCATCTGAAAAGAAAACGAATGGGGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGCGGAAAGGAAAATGGAAGTCTTGACGCCAGTTCTAGAGTTTCTCATAAAGTCACTCCCAAGAAATTAGGGACTTTCAATTCCAGTGAAGGAGCTGCTTCCACATCTGGGATCGCTTCACAGACGGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCGTCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTTTGCTTGAGTTTGCGCAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGATCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGAGAAGACAAGAACAAGCGGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGATATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCCTGTCCAGAGCGGCATTTTGTACACATATTGGAGCCATTCCTGAAAATCATCACAAAATCTTCGAGGATTAATACAACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCGAAGAAATTGATTGTGGAGAATGATCTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCGCTACACATAAACACTGTTTTGTAA 4143 0.4166 MSRQTTTTAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSGTLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKELSSAAPQGRKSHEDNASAPNFSNERAENEDHVPSDQVLTLAIREKSLLQTGSSNLSPNREVGNSEATGSHEISNEELHEVMMNGEVGSPQSRGIASKVGGKDSSVNNGNKSFAFGPRGQDNSSLKAMKMPTTVEGNELSRFSDPPGDACLDDLFHPLDKQPGDVAAEASTSASTSHMVKGNTPTTDGGKNDLAKELRATIARKQWEKESEIGQANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFNQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSAQRPRSGILDPTHPYINQNEALLSSVDQQDPSKVRRGVLDHHLEQLHPSSSNPRRSSDANHSMDDAMSLEKNSTQTPRESSVGALKERDVESRQRISTTRASTDRPPKSTEPSSNGLSVTGGTHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDASSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02623 1380 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Viun11g02623 1380 MobiDBLite consensus disorder prediction 411 450 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 291 359 - -
Viun11g02623 1380 Gene3D Transferase(Phosphotransferase) domain 1 17 309 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 334 349 - -
Viun11g02623 1380 CDD STKc_Cdc7_like 19 274 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 858 873 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 780 806 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 834 918 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 492 514 - -
Viun11g02623 1380 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Viun11g02623 1380 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02623 1380 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02623 1380 SUPERFAMILY ARM repeat 1249 1362 IPR016024 -
Viun11g02623 1380 FunFam MAP3K epsilon protein kinase 1 578 792 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 426 450 - -
Viun11g02623 1380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Viun11g02623 1380 SMART arm_5 614 654 IPR000225 GO:0005515
Viun11g02623 1380 SMART arm_5 1165 1204 IPR000225 GO:0005515
Viun11g02623 1380 SMART arm_5 1119 1163 IPR000225 GO:0005515
Viun11g02623 1380 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Viun11g02623 1380 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Viun11g02623 1380 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Viun11g02623 1380 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Viun11g02623 1380 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Viun11g02623 1380 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02623 1380 Gene3D - 576 783 IPR011989 -
Viun11g02623 1380 Gene3D - 1035 1377 IPR011989 -
Viun11g02623 1380 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 728 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 375 395 - -
Viun11g02623 1380 FunFam MAP3K epsilon protein kinase 1-like 1034 1375 - -
Viun11g02623 1380 SUPERFAMILY ARM repeat 586 1272 IPR016024 -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 888 918 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 303 326 - -
Viun11g02623 1380 MobiDBLite consensus disorder prediction 487 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02623 Viun-Chr11 39163492 39181127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02623 1 1380 MAP Kinase Kinase Kinase AT3G13530 73.071 0.0 1990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Viun11g02623 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02623 - - gmx:100813256 2471.81