Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02600 ATGAATTCTCGGACAGGCAAGGGACCTGCAGTCAGAAGCTACCGGAGGAGAAAGGCAGTCTTGGACCTTGACCTTAATCGTGTGCCAGCTGGTGACAATCGTGAGCACGAGGGACCTTCAATACAGTTAGGGCCACAAGTAGTTATAGTTGAACAGCAGCCACCGGCCTCTCAGCCGACCATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAGGGGCTTTTGCTGAGGCTAAAAACAAATCCAGAAGAAACCGAGGGAGGACTGTAGTTGATGTTGAACTAGAAGATCAGACTCGGCGCAACAAGCGCAGAAGAGAATTGCGAAATCAAACAATTATTAATTGTGAGAAGTATATAAATTTAGAAGGCAGTAGCAGTTCTATGAGTGATAATGCTAAAATGATTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 621 0.4396 MNSRTGKGPAVRSYRRRKAVLDLDLNRVPAGDNREHEGPSIQLGPQVVIVEQQPPASQPTMIDVEDIDDDVVECTPGAFAEAKNKSRRNRGRTVVDVELEDQTRRNKRRRELRNQTIINCEKYINLEGSSSSMSDNAKMIPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02600 206 SMART ring_2 151 188 IPR001841 -
Viun11g02600 206 PANTHER ELFLESS, ISOFORM B 4 206 - -
Viun11g02600 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Viun11g02600 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 205 IPR013083 -
Viun11g02600 206 SUPERFAMILY RING/U-box 150 195 - -
Viun11g02600 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Viun11g02600 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02600 Viun-Chr11 39041659 39045858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02600 1 205 C3H Transcription Factor Family AT5G48655 52.358 2.27e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02600 K22651 - gmx:100792853 305.064