Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02591 ATGAATATTGATTTGCAAGATACGAAGGATTCTCGTCGTCGCTATGACAAAGCTGTCCAATCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTAAAGAAGAATACACCACAAGATATTGTAACTGAATTAGAAGAGGATCTGCAAAATTCCAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCGATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGTTGGAGAATATACGAGCTTCTAGCAATTTTACTGAAACCATGTCAGGTTCTGAAGGCATCCATGTTGTAGGGTTGAATTCGTACAGGAGTTTAGATTCAGGGATGCTGTCTTCATCCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAAAGGTCATCGAGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAAGGAATTTATATTATTACAGAGTCAAGGGTGTCAAGCCCACGGGCTCTCAGTCATATAATTATGCTCGTTCTTATGAACAAACTAGTGGAATGTTTGGTAGATTCCGTTTAAAACACAACAGGGCTGCATCACTGAATGATGATATTTTAGGTTGTTACACTATTGATCTATGCACATCTACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACGCTCACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTTAACAAAATTACTGGAGCTATAACATTACTTTTTAATTCACAGTTTCTTCAAGAGCCTCCATATGGTGCAGCGAATTCACAGAGTAAAAACTTAGCATCTGGTGCTTCTTTGTCATATCATTCGGAGGATGATCAGGAATCATTGAGGAATGACTTATCTTCCAAGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCTTACTGTAATTCTATATGGGAGGGCTTGCTGCCGGATCATGAAAGGGTAGGTGAATTACGTGTGCCTATGAAACCTTGTTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGTACGTAGAGAAAGCACTAATAATCCGAGAAGAGGATATACCCTCAGTTTCCGTAAGAATTTGGCAAGCAGTTCAGACTGTAAATGTAAGAGAAGTGTATCGGCTCATTGTTACGTCAGCATCAAATATGATAAACACAAAATATGGTGATGAGGTTCACCATGCTGCTGAGGCGGAAGGGCAGCAGCATGATCCCGATCCCGAAGCTTGTCTGATGGTCGAAGAGACTATTGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGTCATACTGACAGTACACTGATGGTCGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATATGTCTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAACTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGCCTCACTAATTGGAGCGTTCATCAGTTCCCTATTTTAGATGTGTCACGAGATGTTTTAGACTACTTCTCATCGCTGCACAAACAGCTAAGAATTTTCATTTGTCAAGCTTTTTGTGTTCTATTTGGCATCAATTACATGCTATATATATATATATATATATATATATATATATATATATATATATATATATTTGTGGGTCTTAATGCACACAAATATAAATGA 2094 0.3825 MNIDLQDTKDSRRRYDKAVQSYDQSREKFVSLKKNTPQDIVTELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNFTETMSGSEGIHVVGLNSYRSLDSGMLSSSKGELQTVKQGYLLKRSSSSRGDWKRRFFVLDNQRNLYYYRVKGVKPTGSQSYNYARSYEQTSGMFGRFRLKHNRAASLNDDILGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTLTLQAENEADRMDWVNKITGAITLLFNSQFLQEPPYGAANSQSKNLASGASLSYHSEDDQESLRNDLSSKEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLPDHERVGELRVPMKPCSTDAFQIKEKYIQAKYVEKALIIREEDIPSVSVRIWQAVQTVNVREVYRLIVTSASNMINTKYGDEVHHAAEAEGQQHDPDPEACLMVEETIETERCFRGWSLLHLACHTDSTLMVELLLQFGADVNMSDYHGRTPLHHCITTGKNQLAKFLLRSLTNWSVHQFPILDVSRDVLDYFSSLHKQLRIFICQAFCVLFGINYMLYIYIYIYIYIYIYIYIFVGLNAHKYK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02591 697 CDD ArfGap 371 485 - -
Viun11g02591 697 Coils Coil 117 137 - -
Viun11g02591 697 CDD PH_ACAP 186 321 - -
Viun11g02591 697 SMART ANK_2a 568 597 IPR002110 GO:0005515
Viun11g02591 697 SMART ANK_2a 601 630 IPR002110 GO:0005515
Viun11g02591 697 SMART PH_update 184 319 IPR001849 -
Viun11g02591 697 SUPERFAMILY PH domain-like 184 338 - -
Viun11g02591 697 PANTHER CENTAURIN/ARF 2 623 IPR045258 GO:0005096
Viun11g02591 697 Pfam Ankyrin repeats (many copies) 570 622 IPR002110 GO:0005515
Viun11g02591 697 Pfam Putative GTPase activating protein for Arf 371 491 IPR001164 GO:0005096
Viun11g02591 697 Gene3D Arfaptin homology (AH) domain/BAR domain 1 141 IPR027267 -
Viun11g02591 697 ProSiteProfiles PH domain profile. 183 317 IPR001849 -
Viun11g02591 697 SUPERFAMILY Ankyrin repeat 565 624 IPR036770 -
Viun11g02591 697 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Viun11g02591 697 Pfam PH domain 185 316 IPR001849 -
Viun11g02591 697 SMART arf_gap_3 367 498 IPR001164 GO:0005096
Viun11g02591 697 Gene3D - 499 640 IPR036770 -
Viun11g02591 697 PRINTS HIV Rev interacting protein signature 421 442 IPR001164 GO:0005096
Viun11g02591 697 PRINTS HIV Rev interacting protein signature 379 398 IPR001164 GO:0005096
Viun11g02591 697 PRINTS HIV Rev interacting protein signature 398 415 IPR001164 GO:0005096
Viun11g02591 697 Pfam BAR domain of APPL family 4 118 IPR004148 GO:0005515|GO:0005737
Viun11g02591 697 Gene3D Arf GTPase activating protein 347 498 IPR038508 -
Viun11g02591 697 SUPERFAMILY BAR/IMD domain-like 2 206 IPR027267 -
Viun11g02591 697 Gene3D - 177 330 IPR011993 -
Viun11g02591 697 SUPERFAMILY ArfGap/RecO-like zinc finger 369 491 IPR037278 -
Viun11g02591 697 ProSiteProfiles Ankyrin repeat region circular profile. 568 599 - -
Viun11g02591 697 ProSiteProfiles ARF GTPase-activating proteins domain profile. 367 498 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02591 Viun-Chr11 38982611 38994459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02591 379 485 C2H2 Transcription Factor Family AT4G21160 39.815 7.33e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02591 K12489 - gmx:100796740 1066.99