Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02589 ATGGCATCGGCATTCGTCAAGCTCGACGATTCCCCTATGTTCCAGAAACAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTAAAGGATCGATGCCAGAAACTATATAACGGGTGTCAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATAACCTTTGCTGAGTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGTCCTGTCATAACTAAGTTTATTACCACATTGCGCGAGCTAGCTTCTTTCAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACGGAGTTTATGAATATTGATTTGCAAGATACGAAGGATTCTCGTCGTCGCTATGACAAAGCTGTCCAATCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTAAAGAAGAATACACCACAAGATATTGTAACTGAATTAGAAGAGGATCTGCAAAATTCCAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCGATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGTTGGAGAATATACGAGCTTCTAGCAATTTTACTGAAACCATGTCAGGTTCTGAAGGCATCCATGTTGTAGGGTTGAATTCGTACAGGAGTTTAGATTCAGGGATGCTGTCTTCATCCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAAAGGTCATCGAGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAAGGAATTTATATTATTACAGAGTCAAGGGTGTCAAGCCCACGGGCTCTCAGTCATATAATTATGCTCGTTCTTATGAACAAACTAGTGGAATGTTTGGTAGATTCCGTTTAAAACACAACAGGGCTGCATCACTGAATGATGATATTTTAGGTTGTTACACTATTGATCTATGCACATCTACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACGCTCACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTTAACAAAATTACTGGAGCTATAACATTACTTTTTAATTCACAGTTTCTTCAAGAGCCTCCATATGGTGCAGCGAATTCACAGAGTAAAAACTTAGCATCTGGTGCTTCTTTGTCATATCATTCGGAGGATGATCAGGAATCATTGAGGAATGACTTATCTTCCAAGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCTTACTGTAATTCTATATGGGAGGGCTTGCTGCCGGATCATGAAAGGGTAGGTGAATTACGTGTGCCTATGAAACCTTGTTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGTACGTAGAGAAAGCACTAATAATCCGAGAAGAGGATATACCCTCAGTTTCCGTAAGAATTTGGCAAGCAGTTCAGACTGTAAATGTAAGAGAAGTGTATCGGCTCATTGTTACGTCAGCATCAAATATGATAAACACAAAATATGGTGATGAGGTTCACCATGCTGCTGAGGCGGAAGGGCAGCAGCATGATCCCGATCCCGAAGCTTGTCTGATGGTCGAAGAGACTATTGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGTCATACTGACAGTACACTGATGGTCGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATATGTCTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAACTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAATTATAGATGCTGGAGGGCTCACTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATCCTAG 2319 0.4019 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYNGCQKFMTALGEAYNGEITFAESLEVFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLIDRLTEFMNIDLQDTKDSRRRYDKAVQSYDQSREKFVSLKKNTPQDIVTELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNFTETMSGSEGIHVVGLNSYRSLDSGMLSSSKGELQTVKQGYLLKRSSSSRGDWKRRFFVLDNQRNLYYYRVKGVKPTGSQSYNYARSYEQTSGMFGRFRLKHNRAASLNDDILGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTLTLQAENEADRMDWVNKITGAITLLFNSQFLQEPPYGAANSQSKNLASGASLSYHSEDDQESLRNDLSSKEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLPDHERVGELRVPMKPCSTDAFQIKEKYIQAKYVEKALIIREEDIPSVSVRIWQAVQTVNVREVYRLIVTSASNMINTKYGDEVHHAAEAEGQQHDPDPEACLMVEETIETERCFRGWSLLHLACHTDSTLMVELLLQFGADVNMSDYHGRTPLHHCITTGKNQLAKFLLRRGARPSIIDAGGLTILERAMEMGAITDEELFIMLAES 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02589 772 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Viun11g02589 772 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Viun11g02589 772 SUPERFAMILY Ankyrin repeat 677 765 IPR036770 -
Viun11g02589 772 Pfam Ankyrin repeats (3 copies) 674 742 IPR002110 GO:0005515
Viun11g02589 772 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Viun11g02589 772 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Viun11g02589 772 Gene3D - 609 766 IPR036770 -
Viun11g02589 772 SMART arf_gap_3 479 610 IPR001164 GO:0005096
Viun11g02589 772 SUPERFAMILY PH domain-like 296 450 - -
Viun11g02589 772 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Viun11g02589 772 Pfam Putative GTPase activating protein for Arf 483 603 IPR001164 GO:0005096
Viun11g02589 772 ProSiteProfiles Ankyrin repeat region circular profile. 680 711 - -
Viun11g02589 772 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Viun11g02589 772 Gene3D Arf GTPase activating protein 459 608 IPR038508 -
Viun11g02589 772 SMART ANK_2a 680 709 IPR002110 GO:0005515
Viun11g02589 772 SMART ANK_2a 713 742 IPR002110 GO:0005515
Viun11g02589 772 PANTHER CENTAURIN/ARF 3 771 IPR045258 GO:0005096
Viun11g02589 772 Pfam PH domain 297 428 IPR001849 -
Viun11g02589 772 Coils Coil 229 249 - -
Viun11g02589 772 ProSiteProfiles Ankyrin repeat region circular profile. 713 744 - -
Viun11g02589 772 Gene3D - 289 442 IPR011993 -
Viun11g02589 772 SMART PH_update 296 431 IPR001849 -
Viun11g02589 772 CDD PH_ACAP 298 433 - -
Viun11g02589 772 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Viun11g02589 772 CDD ArfGap 483 597 - -
Viun11g02589 772 CDD BAR_SFC_plant 16 217 IPR035670 -
Viun11g02589 772 ProSiteProfiles Ankyrin repeat profile. 713 745 IPR002110 GO:0005515
Viun11g02589 772 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Viun11g02589 772 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Viun11g02589 772 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Viun11g02589 772 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 610 IPR001164 GO:0005096
Viun11g02589 772 SUPERFAMILY ArfGap/RecO-like zinc finger 481 603 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02589 Viun-Chr11 38982217 38994507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02589 489 597 C2H2 Transcription Factor Family AT4G05330 41.818 6.93e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02589 K12489 - gmx:100796740 1332.78