Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02574 ATGAGTGGAAAAGTGAGTGGAAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGGTTCATAACCCCCGATGATGGCTCTGAGGATCTTTTCGTTCATCAATCGCAGATCAAATCTGACGGATTCCGAAGCCTAGCTGAGGGAGAATCCGTTGAGTTTGCTATTGAATCTGACGCTGATGGACGCGCCAAGGCTGTTGATGTCACCGGTCCTGACGGTGCCAGTGTCCAGGGAACCCGTCGTGGCGGTGATGGTGGTCGCGGATATGGCGGTGGACGTGGTGGCGGCGGCGGTGGATATGGTGGTGGTGGTGGATATGGTGGAGGCGGTGGATACGGCGGTGGTGGACGTGGTGGAGGCGGTGGTGGCGGTGCATGCTACAACTGCGGCGAATCTGGACACCTGGCTAGGGATTGCTTCCAGGGAGGCGGTGGTGGAGACAGGTACGGAGGAGGCGGTGGTGGTGGCAGGTACGGTGGAGGAGGAGGTGGTGGTGGAAGGTATGGAGGAGGTGGCGGCGGCGGTGGCGGCGGTGGAAGCTGCTACAACTGTGGAGAGTCAGGGCACTTTGCCAGAGAATGCCCAACTAATGCTCGTTGA 600 0.5883 MSGKVSGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDADGRAKAVDVTGPDGASVQGTRRGGDGGRGYGGGRGGGGGGYGGGGGYGGGGGYGGGGRGGGGGGGACYNCGESGHLARDCFQGGGGGDRYGGGGGGGRYGGGGGGGGRYGGGGGGGGGGGSCYNCGESGHFARECPTNAR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02574 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 195 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Viun11g02574 199 ProSiteProfiles Zinc finger CCHC-type profile. 126 139 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 SUPERFAMILY Retrovirus zinc finger-like domains 107 142 IPR036875 GO:0003676|GO:0008270
Viun11g02574 199 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Viun11g02574 199 SMART csp_8 6 71 IPR011129 GO:0003676
Viun11g02574 199 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Viun11g02574 199 Gene3D - 119 148 - -
Viun11g02574 199 Gene3D - 176 199 - -
Viun11g02574 199 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Viun11g02574 199 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Viun11g02574 199 SUPERFAMILY Retrovirus zinc finger-like domains 162 197 IPR036875 GO:0003676|GO:0008270
Viun11g02574 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 197 - -
Viun11g02574 199 MobiDBLite consensus disorder prediction 64 90 - -
Viun11g02574 199 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Viun11g02574 199 Gene3D - 2 82 IPR012340 -
Viun11g02574 199 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Viun11g02574 199 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Viun11g02574 199 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02574 Viun-Chr11 38896236 38897168 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Viun11g02574 CSD 3.4e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02574 - K09250 gmx:100799708 201.83