Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02561 ATGGGAAGATCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTCATATCTTATATTCGAGCTCACGGCGAGGGCTGCTGGCGGTCCCTCCCCAAAGCCGCCGGTCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGACCCGACCTCAAGCGTGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGGAACAAGTGGTCTTTGATAGCTGGGAGATTGCCGGGGAGAACGGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCATAGACCTCTGAACGAAGCTGCTTCTTCTGCAACAGTTGTAACAGTCGCAACTGCCAGTAATATATCTTTCGGTAAACAAGAACAAGAGACAAGTTCGAGTAACGGAAGCGTGGTTAAAGGGACCATCTTCGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCACCAACAACAACATCATCAACAACAACCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGACTGCAGCTGCAACGTGGCCAGCCCCGTCACTGCCAACACCACCGCTCCTCCTTCTTCCGCCGCCGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 765 0.5046 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASSATVVTVATASNISFGKQEQETSSSNGSVVKGTIFERCPDLNLELTISPPRHQQQHHQQQPQKNLCFVCSLGLHNSKDCSCNVASPVTANTTAPPSSAAAYDFLGLKTNGVWDCTSLEMK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02561 254 CDD SANT 69 112 IPR001005 -
Viun11g02561 254 Gene3D - 68 137 - -
Viun11g02561 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g02561 254 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun11g02561 254 CDD SANT 16 61 IPR001005 -
Viun11g02561 254 Coils Coil 248 254 - -
Viun11g02561 254 SMART sant 66 114 IPR001005 -
Viun11g02561 254 SMART sant 13 63 IPR001005 -
Viun11g02561 254 FunFam Myb transcription factor 68 137 - -
Viun11g02561 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g02561 254 Gene3D - 14 66 - -
Viun11g02561 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g02561 254 FunFam MYB-related transcription factor 13 66 - -
Viun11g02561 254 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Viun11g02561 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Viun11g02561 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g02561 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02561 Viun-Chr11 38801460 38802898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02561 1 254 MYB Transcription Factor Family AT4G34990 58.759 1.02e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g02561 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02561 K09422 - gmx:780553 441.039