Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02553 ATGTTTGCAGGTGATTCAGCTAAGCAGAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAATTCGGGAATCCCACAAACCCATCATGCAAGGAACATGTCAGTAGTACAATGGGTAATGACCTTACCGGATCGTTCACCATGTAAAAGTCCCTGCTCTTCTTCCTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGACGAGAGCTCCAAATTTTCTTCAGTTCCATCTATTGAGCTACCAAATGGCCTAGAGGAGATGCAATGCGTAAATTCAATCGGCTGCAAGTGGTTCAGCCTGGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAACCGTGTGTACAAAGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTAATGCAGTCATCAAAAGAAGCCTGGAAAGAGTTTGCCCTTGAGATGGAAATAACATCCTCATTGAGGCACAAAAACATTGCCCCTCTACTGGGGATTTGTACAGAGAACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCAGCTTAGAGGAAAATCTGCATGGAAAGAGAAAATTGTCATGGGAGGTGAGATTTAATGTGGCGGTTAGGATCGCTGAAGCACTGGATTACCTACACAGGGAAACTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCAAGGGTTTGAACCTCAGTTATCTGATTTCGGACTTGCACTATGGGGACCAACAAATTCATCCTTTTTGACACAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGCTTATGCATTCGGTGTAGTTCTACTTGAACTCATATCAGGAAGGGAACCAATCAGTTCAGCAGCTTGCAAAGGACAGGAGAGCGTGGTCGTGTGGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTATTGGACCCAGATTTAGAAGGGAAATTTGATGAGATCCAATTGCAGAGAATGGTTATGGCAGCATCTTTATGCATCCAACGAGCTGCTCGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTGCTGAACTCCCATGGGAACAATGAGGATGATTCAGAAAATGGAGAAAACATCGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGAACAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTCAATTAG 1365 0.4322 MFAGDSAKQKLGWPLLRGANSGIPQTHHARNMSVVQWVMTLPDRSPCKSPCSSSSEDNPFERSISDIDDESSKFSSVPSIELPNGLEEMQCVNSIGCKWFSLELLQSCTRQFSSENLVGKGGSNRVYKGVLPDGKPVAVKVMQSSKEAWKEFALEMEITSSLRHKNIAPLLGICTENNTLISVYDYLPQGSLEENLHGKRKLSWEVRFNVAVRIAEALDYLHRETLKPVIHRDVKSSNILLSQGFEPQLSDFGLALWGPTNSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDAYAFGVVLLELISGREPISSAACKGQESVVVWAKPMIDSGDIKGLLDPDLEGKFDEIQLQRMVMAASLCIQRAARLRPKLNQILKILKGDEKVEYLLNSHGNNEDDSENGENIDDEVYPSSSAELHLSLALLGVDDEQASQTSTELSYSEHLKEQWSRSSSFN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02553 454 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
Viun11g02553 454 MobiDBLite consensus disorder prediction 48 76 - -
Viun11g02553 454 ProSiteProfiles Protein kinase domain profile. 112 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02553 454 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 81 186 - -
Viun11g02553 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Viun11g02553 454 Gene3D Transferase(Phosphotransferase) domain 1 187 393 - -
Viun11g02553 454 FunFam Putative receptor-like serine/threonine-protein kinase 187 394 - -
Viun11g02553 454 SMART serkin_6 112 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02553 454 SUPERFAMILY Protein kinase-like (PK-like) 93 378 IPR011009 -
Viun11g02553 454 MobiDBLite consensus disorder prediction 431 454 - -
Viun11g02553 454 Pfam Protein kinase domain 114 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02553 454 PANTHER OS08G0249100 PROTEIN 30 395 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02553 Viun-Chr11 38732121 38735292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02553 91 378 Trihelix Transcription Factor Family AT1G70460 41.017 2.20e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun11g02553 Pkinase 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02553 - - gmx:100789189 719.153